Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.4e-187 659.4 323 100.0
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 6.0e-151 537.7 330 81.2
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 2.1e-148 529.3 332 80.4
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 6.4e-145 517.7 330 78.8
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 8.4e-145 517.3 330 78.8
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.2e-120 435.3 329 66.6
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 4.2e-120 435.3 330 67.0
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 3.6e-119 432.2 332 66.6
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 4.6e-119 431.8 329 66.6
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 6.1e-119 431.4 329 66.0
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.0e-118 430.6 332 67.5
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 6.7e-118 427.9 333 66.4
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 1.1e-117 427.2 334 67.1
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.1e-117 427.2 334 68.0
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 2.0e-117 426.4 331 65.9
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 3.3e-117 425.6 338 65.1
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 5.7e-117 424.9 333 66.1
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-116 423.7 333 65.5
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.8e-116 422.5 330 65.5
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 4.8e-116 421.8 333 66.4
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 6.3e-116 421.4 332 65.7
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.1e-115 420.6 332 66.0
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.4e-115 420.2 333 65.2
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 6.9e-115 417.9 331 65.9
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 1.2e-114 417.2 333 65.5
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 2.0e-114 416.4 336 64.0
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.6e-114 416.0 334 65.6
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 2.6e-114 416.0 324 67.0
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 3.4e-114 415.6 331 66.2
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 2.2e-113 412.9 329 64.1
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 5.0e-113 411.8 332 63.9
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 1.1e-112 410.6 334 65.9
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.4e-112 410.2 338 64.5
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 2.5e-112 409.5 334 65.6
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 4.2e-112 408.7 334 64.4
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 5.5e-112 408.3 332 64.2
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 5.5e-112 408.3 331 62.8
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.2e-111 407.1 317 65.6
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.1e-111 406.4 335 64.5
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 2.7e-111 406.0 334 63.5
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 4.7e-111 405.2 332 63.0
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 7.9e-111 404.4 332 63.9
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 3.0e-110 402.5 328 62.8
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 5.2e-110 401.7 338 63.0
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.2e-110 401.7 335 63.0
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 6.7e-110 401.4 334 63.5
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 8.8e-110 401.0 333 63.1
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.1e-109 400.6 338 61.5
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.1e-109 400.6 338 61.5
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 5.7e-109 398.3 334 63.2
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 5.7e-109 398.3 320 63.8
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 7.4e-109 397.9 333 62.5
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 9.7e-109 397.5 337 62.3
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.3e-108 397.1 334 63.2
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.7e-108 396.7 333 62.5
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 2.2e-108 396.4 331 62.5
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.8e-108 396.0 334 62.9
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.8e-108 396.0 332 62.0
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 3.7e-108 395.6 334 62.9
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 4.8e-108 395.2 333 61.9
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 6.3e-108 394.8 335 61.5
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 6.3e-108 394.8 334 62.9
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.1e-107 394.0 339 62.5
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.1e-107 394.0 328 62.2
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.4e-107 393.7 334 62.6
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.8e-107 393.3 331 63.1
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 2.4e-107 392.9 333 61.9
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 4.1e-107 392.1 330 62.1
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 2.0e-106 389.8 338 59.8
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 2.0e-106 389.8 339 59.3
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 2.6e-106 389.4 340 59.1
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 2.6e-106 389.4 340 61.5
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 4.5e-106 388.7 328 61.9
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 7.7e-106 387.9 336 61.3
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.0e-105 387.5 330 61.5
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.7e-105 386.7 339 59.0
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 3.8e-105 385.6 339 59.0
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 5.0e-105 385.2 331 60.1
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 8.5e-105 384.4 333 61.3
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.1e-104 384.0 339 58.7
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.5e-104 383.6 333 60.7
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.5e-104 383.6 328 60.4
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.5e-104 383.6 339 58.7
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 9.4e-104 380.9 330 60.3
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 9.4e-104 380.9 337 61.7
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.6e-103 380.2 332 61.1
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 4.7e-103 378.6 377 55.2
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 4.0e-102 375.6 331 60.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 4.0e-102 375.6 331 60.1
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 6.7e-102 374.8 336 58.6
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 6.7e-102 374.8 343 61.5
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 8.8e-102 374.4 326 60.7
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 5.7e-101 371.7 354 56.8
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 2.4e-99 366.3 332 56.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 4.1e-99 365.5 336 59.5
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-98 364.0 356 56.7
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-98 364.0 356 56.7
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.0e-97 360.9 337 58.2
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.2e-97 359.8 340 58.5
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 2.2e-97 359.8 337 58.8
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 5.0e-97 358.6 336 57.4
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 9.4e-96 354.4 355 56.6
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 4.7e-95 352.1 337 57.6
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.6e-90 337.0 326 54.9
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 2.0e-90 336.7 339 54.6
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 5.9e-90 335.1 357 54.3
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 9.5e-88 327.8 348 54.0
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 3.6e-87 325.9 355 52.1
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 3.6e-87 325.9 280 61.8
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 8.0e-87 324.7 329 54.1
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.0e-86 324.3 254 65.0
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 8.9e-86 321.2 352 52.3
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.5e-85 320.5 353 53.5
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 9.2e-83 311.2 327 52.0
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 3.2e-75 286.2 333 51.1
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-73 280.8 227 63.9
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 6.2e-71 271.9 322 51.9
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.4e-67 260.8 238 56.3
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.3e-65 253.4 203 62.6
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 3.3e-64 249.6 185 67.0
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 3.3e-64 249.6 352 41.2
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 6.2e-63 245.4 250 53.6
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.6e-58 230.7 266 51.5
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 6.6e-57 225.3 181 63.0
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 7.6e-53 211.8 351 41.3
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.2e-52 210.3 383 38.9
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 4.9e-52 209.1 356 39.0
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.1e-51 208.0 349 41.0
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 6.9e-46 188.7 346 39.6
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.4e-45 186.4 215 49.8
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 6.0e-42 175.6 174 49.4
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.0e-41 174.9 350 37.7
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.7e-41 174.1 212 47.2
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 6.2e-39 165.6 351 34.2
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.5e-32 144.4 329 35.3
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.5e-29 134.4 352 34.1
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.3e-23 114.8 111 51.4
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-22 111.3 109 52.3
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 9.0e-22 108.6 148 41.9
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 3.4e-21 106.7 129 46.5
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 4.5e-21 106.3 73 61.6
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-19 101.7 81 54.3
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.2e-19 99.8 106 54.7
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 5.5e-19 99.4 115 40.9
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 9.3e-19 98.6 104 48.1
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 6.9e-14 82.4 117 33.3
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.5e-13 81.3 73 49.3
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 2.0e-13 80.9 55 61.8
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.0e-12 78.6 81 53.1
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.7e-12 77.8 65 60.0
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.2e-12 77.4 104 47.1
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 2.3e-09 67.4 43 74.4
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.3e-08 63.5 93 32.3
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 8.2e-07 58.9 43 62.8


User provided reference genes

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