Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 2.7e-118 428.7 219 100.0
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 7.8e-110 400.6 219 91.3
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.9e-103 379.4 219 86.3
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 4.6e-102 374.8 219 84.9
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 8.1e-83 310.8 219 69.9
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 8.1e-83 310.8 219 70.8
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 3.1e-82 308.9 220 69.1
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 3.1e-82 308.9 219 71.2
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 9.0e-82 307.4 220 70.9
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 1.5e-81 306.6 219 68.0
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.3e-80 303.5 216 69.4
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.7e-80 303.1 219 68.5
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 2.9e-80 302.4 220 68.6
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 2.1e-78 296.2 219 68.9
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 3.9e-77 292.0 223 66.4
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.5e-76 290.0 219 66.2
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-76 289.7 220 68.6
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 1.9e-76 289.7 220 68.6
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 3.3e-76 288.9 220 65.5
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 5.6e-76 288.1 220 65.9
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.4e-76 287.7 220 68.6
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-75 286.6 220 67.7
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-75 286.6 220 67.7
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-75 286.6 220 67.7
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.1e-75 286.2 219 64.8
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-75 286.2 220 67.7
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.1e-75 286.2 220 67.7
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.2e-75 284.6 220 67.3
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-74 283.9 219 65.3
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-74 283.5 220 67.3
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.8e-74 283.1 220 67.3
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 4.0e-74 282.0 219 64.8
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 4.0e-74 282.0 213 68.1
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 6.9e-74 281.2 221 65.6
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.5e-73 280.0 214 65.0
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.3e-72 276.9 212 65.1
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.3e-72 276.9 219 64.4
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 6.4e-72 274.6 223 65.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 6.4e-72 274.6 219 64.8
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 6.4e-72 274.6 221 63.3
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.4e-71 272.7 224 62.1
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 2.4e-71 272.7 223 61.9
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 4.2e-71 271.9 219 63.9
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 4.2e-71 271.9 223 61.9
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 4.2e-71 271.9 223 62.8
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 9.3e-71 270.8 249 57.8
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 3.5e-70 268.9 223 61.0
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 4.6e-70 268.5 223 60.5
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 6.0e-70 268.1 223 60.5
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.0e-69 267.3 220 63.2
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.0e-69 267.3 220 64.1
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.0e-69 267.3 223 61.0
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 3.0e-69 265.8 220 62.7
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 3.0e-69 265.8 223 61.0
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 5.1e-69 265.0 223 59.6
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.9e-68 263.1 219 62.1
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 4.3e-68 261.9 221 62.9
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.6e-67 260.0 220 61.8
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 2.1e-67 259.6 221 60.6
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 2.8e-67 259.2 225 60.9
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.7e-67 258.8 219 62.1
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.7e-67 258.8 219 62.1
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 6.2e-67 258.1 219 61.6
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 6.2e-67 258.1 225 60.4
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.4e-66 256.9 225 60.4
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.4e-66 256.9 219 61.6
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.8e-66 256.5 219 60.7
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.8e-66 256.5 219 61.6
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 3.1e-66 255.8 219 61.2
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 3.1e-66 255.8 219 61.2
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 6.9e-66 254.6 219 61.2
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 6.9e-66 254.6 219 60.7
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.5e-65 253.4 225 56.9
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 3.4e-65 252.3 219 59.8
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 4.5e-65 251.9 219 63.0
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 5.8e-65 251.5 227 59.9
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 7.6e-65 251.1 219 59.8
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 7.6e-65 251.1 219 59.8
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 7.6e-65 251.1 225 61.3
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.0e-64 250.8 221 57.9
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.7e-64 250.0 222 60.4
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.2e-64 249.6 216 61.6
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 4.9e-64 248.4 221 62.4
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 4.9e-64 248.4 223 60.1
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 6.5e-64 248.1 219 59.8
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 1.4e-63 246.9 148 83.8
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.4e-63 246.9 216 59.7
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 4.2e-63 245.4 222 59.0
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.2e-62 243.8 219 58.4
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 1.2e-62 243.8 232 56.9
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 1.6e-62 243.4 227 58.1
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 3.5e-62 242.3 230 56.5
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 6.0e-62 241.5 233 56.2
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.3e-61 240.4 219 58.9
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.3e-61 240.4 186 66.1
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.1e-60 237.3 233 55.8
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.1e-60 237.3 198 64.6
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 1.1e-60 237.3 210 61.0
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.5e-60 236.1 185 65.9
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 9.6e-60 234.2 235 54.5
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.3e-59 233.8 264 48.5
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 1.6e-59 233.4 256 53.1
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.7e-59 232.3 206 60.7
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 4.8e-59 231.9 219 56.6
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 4.1e-58 228.8 234 52.1
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.0e-56 224.2 191 58.6
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.7e-56 223.4 219 55.3
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.2e-56 223.0 219 53.0
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 2.9e-56 222.6 257 50.6
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 5.0e-56 221.9 193 59.1
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.1e-55 220.7 267 49.8
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-55 219.9 166 68.7
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 3.6e-54 215.7 219 53.9
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.8e-53 213.4 204 57.4
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.3e-53 213.0 195 59.0
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 8.7e-53 211.1 183 60.7
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.9e-52 209.9 224 52.2
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 5.3e-50 201.8 349 37.0
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.4e-49 199.1 151 70.2
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 4.5e-49 198.7 197 54.8
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 1.6e-46 190.3 194 53.6
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.6e-46 190.3 252 45.6
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 7.9e-46 188.0 214 51.9
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 5.1e-45 185.3 168 56.5
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 7.4e-44 181.4 190 55.8
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.7e-44 181.0 148 64.2
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 5.3e-42 175.3 138 66.7
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 3.4e-41 172.6 139 68.3
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 5.0e-40 168.7 177 54.8
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 9.4e-39 164.5 134 64.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.7e-36 155.2 139 63.3
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 7.4e-36 154.8 146 58.2
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 2.4e-34 149.8 97 77.3
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 4.1e-34 149.1 128 66.4
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 4.2e-31 139.0 152 53.3
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.2e-27 126.7 94 67.0
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 1.7e-24 117.1 186 38.7
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 2.9e-24 116.3 193 38.3
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.1e-23 114.4 127 48.0
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.2e-22 110.9 200 36.0
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 4.7e-22 109.0 200 35.5
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 1.2e-20 104.4 111 52.3
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 6.3e-19 98.6 151 43.0
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 1.4e-18 97.4 163 38.7
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.4e-18 95.5 68 64.7
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 8.5e-16 88.2 95 51.6
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.6e-14 84.0 95 49.5
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 4.7e-14 82.4 50 76.0
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 4.4e-12 75.9 139 38.1
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.3e-08 64.3 59 54.2
arahy.Tifrunner.gnm1.ann1.6AA68Y Arachis hypogaea HOM05D001355 ORTHO05D006435 6.1e-06 55.5 71 52.1
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 6.1e-06 55.5 184 31.0


User provided reference genes

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