Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 0.0e+00 2147.1 1108 100.0
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 0.0e+00 1738.8 1114 81.5
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 0.0e+00 1713.0 1044 85.3
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 0.0e+00 1699.5 1138 79.4
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1173.3 1127 59.2
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1114.4 1153 55.9
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1113.6 1134 55.2
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1112.4 1173 53.6
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1106.7 1113 57.4
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1097.8 1133 53.5
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1096.3 1125 54.3
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 0.0e+00 1094.0 1200 53.2
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1087.0 1123 56.5
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 0.0e+00 1075.8 1133 53.9
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 2.6e-310 1068.9 1139 53.6
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 3.6e-304 1048.5 1212 49.8
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 2.0e-302 1042.7 1135 53.7
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 9.8e-302 1040.4 1160 51.4
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 4.9e-301 1038.1 1128 53.6
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 8.9e-295 1017.3 1137 52.6
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.9e-290 1001.9 1153 50.9
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 4.3e-289 998.4 1144 53.3
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 4.7e-288 995.0 1125 51.2
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 1.8e-287 993.0 1135 51.0
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 1.3e-285 986.9 1245 48.9
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.1e-283 979.5 988 55.0
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 5.1e-282 974.9 988 54.7
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 1.4e-279 966.8 1101 49.5
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 2.9e-277 959.1 1146 51.6
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 9.2e-276 954.1 1209 48.5
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 7.8e-275 951.0 1199 48.0
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 2.1e-272 943.0 1250 45.8
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 3.6e-272 942.2 1173 47.5
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.6e-270 936.0 1234 46.0
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 7.6e-270 934.5 1060 52.1
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 9.9e-270 934.1 1174 47.5
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.4e-268 930.2 1180 47.3
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 2.4e-268 929.5 1261 44.7
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 6.6e-266 921.4 1163 46.9
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 5.6e-265 918.3 1164 46.6
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 3.6e-264 915.6 1160 46.4
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.4e-263 913.7 1167 47.6
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 4.0e-263 912.1 1125 47.9
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 7.6e-262 907.9 1161 47.1
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.3e-261 907.1 1167 46.5
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.9e-261 906.0 1297 43.3
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 4.2e-260 902.1 1135 48.5
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 4.2e-260 902.1 1143 49.1
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.1e-259 899.8 1144 48.8
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.3e-258 897.1 1188 46.0
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 6.7e-258 894.8 1147 46.6
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 3.3e-257 892.5 1107 47.2
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 3.3e-257 892.5 1127 46.6
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 7.4e-257 891.3 1141 45.7
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.6e-256 889.0 1170 47.0
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 5.3e-255 885.2 964 50.3
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.2e-254 884.0 1144 46.5
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.5e-254 883.6 1175 45.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.9e-252 876.7 1159 45.2
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 4.2e-252 875.5 1083 47.2
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 9.3e-252 874.4 1018 49.5
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.1e-251 873.2 1257 44.3
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 2.5e-249 866.3 991 49.2
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 7.4e-249 864.8 647 66.0
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 2.1e-248 863.2 1176 44.5
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.4e-247 860.5 1157 47.4
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 4.0e-247 859.0 1242 44.5
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 4.0e-247 859.0 1097 47.7
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.5e-246 857.1 1161 45.5
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 2.0e-246 856.7 1139 45.4
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 7.6e-246 854.7 1099 46.1
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 1.7e-245 853.6 1099 46.1
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 3.8e-245 852.4 1123 46.5
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 3.8e-245 852.4 1138 45.8
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 2.5e-244 849.7 899 51.2
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 5.1e-242 842.0 1234 43.1
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 5.1e-242 842.0 1111 46.0
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 9.6e-241 837.8 1143 45.0
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 2.1e-240 836.6 1260 43.1
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 6.3e-240 835.1 900 50.9
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 2.4e-239 833.2 1155 43.8
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.2e-238 830.9 1151 44.2
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 4.5e-238 828.9 1157 44.5
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 2.2e-237 826.6 1059 46.1
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.9e-237 826.2 1121 45.0
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.5e-236 823.2 1252 42.1
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 3.2e-236 822.8 1121 45.0
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 4.8e-232 808.9 1099 44.9
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.9e-221 773.1 710 56.6
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 8.5e-221 771.5 1141 43.2
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 8.5e-221 771.5 1141 43.2
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 6.1e-219 765.4 1133 41.6
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 3.0e-210 736.5 1053 45.9
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 4.0e-210 736.1 1054 44.6
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.5e-209 734.2 636 57.1
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 9.1e-207 724.9 888 47.7
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.7e-206 723.4 906 46.1
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 8.8e-202 708.4 1078 41.5
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.8e-194 684.1 641 55.1
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 4.9e-192 676.0 1063 40.0
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 2.0e-190 670.6 1113 42.1
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 2.7e-190 670.2 989 41.6
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 4.3e-180 636.3 793 47.9
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.2e-171 608.2 949 40.3
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 3.6e-171 606.7 638 52.4
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 3.1e-170 603.6 937 42.0
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.1e-151 542.0 513 56.3
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 2.8e-147 527.3 474 57.4
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.4e-146 525.0 770 43.9
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 6.9e-146 522.7 813 42.1
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 3.4e-145 520.4 653 47.5
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 3.9e-133 480.3 582 47.8
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 1.1e-124 452.2 688 39.0
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 2.7e-110 404.4 658 37.8
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.7e-104 385.2 341 58.4
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 1.9e-103 381.7 1063 31.9
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 4.5e-97 360.5 956 33.1
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 4.5e-97 360.5 304 59.9
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 2.2e-96 358.2 956 32.9
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 4.2e-95 354.0 301 58.8
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 8.0e-94 349.7 605 39.2
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 6.7e-93 346.7 717 38.1
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 9.4e-87 326.2 295 56.9
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 8.0e-86 323.2 293 56.7
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.9e-66 258.8 407 37.6
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 7.0e-66 256.9 349 41.5
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.2e-58 231.5 453 43.9
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 3.9e-32 144.8 817 24.8
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 7.3e-31 140.6 250 41.2
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 2.9e-27 128.6 270 35.6
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.1e-26 126.7 298 27.5
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 3.2e-26 125.2 227 35.7
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 2.0e-12 79.3 90 51.1
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 1.8e-08 66.2 137 37.2
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 1.8e-08 66.2 142 35.2
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 3.9e-08 65.1 47 68.1
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 3.7e-06 58.5 46 60.9


User provided reference genes

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