Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 5.3e-125 451.1 232 100.0
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 7.5e-103 377.5 237 85.2
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 1.2e-100 370.2 238 82.8
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 3.5e-100 368.6 241 81.7
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 7.0e-93 344.4 241 74.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 3.8e-91 338.6 223 76.2
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.5e-90 336.7 234 74.8
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 2.1e-89 332.8 182 89.6
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.6e-89 332.0 233 75.5
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 4.7e-89 331.6 243 74.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.1e-89 331.3 230 75.7
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 8.0e-89 330.9 212 79.2
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.4e-88 330.1 234 72.6
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.4e-88 330.1 240 73.8
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.3e-88 329.3 227 76.2
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.3e-88 329.3 234 75.2
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.3e-88 329.3 234 75.6
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 3.0e-88 328.9 192 84.4
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 4.0e-88 328.6 180 88.9
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.2e-87 327.0 207 78.7
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.5e-87 326.6 193 84.5
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.5e-87 326.6 224 78.1
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.0e-87 326.2 180 87.8
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 3.4e-87 325.5 179 89.4
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 4.4e-87 325.1 192 83.3
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 5.7e-87 324.7 202 80.2
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 7.5e-87 324.3 225 75.1
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 9.8e-87 323.9 242 72.7
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 9.8e-87 323.9 222 75.7
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.3e-86 323.6 216 79.6
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.3e-86 323.6 216 79.6
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.3e-86 323.6 240 74.6
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.3e-86 323.6 186 83.9
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.3e-86 323.6 219 75.8
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 1.7e-86 323.2 191 84.3
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 2.2e-86 322.8 194 84.0
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 2.2e-86 322.8 211 77.7
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.2e-86 322.8 206 80.1
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 2.9e-86 322.4 232 73.3
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.9e-86 322.4 223 77.6
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 2.9e-86 322.4 226 74.3
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.9e-86 322.4 222 74.8
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 3.7e-86 322.0 179 88.8
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 6.4e-86 321.2 234 71.4
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 6.4e-86 321.2 188 84.0
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 8.3e-86 320.9 238 72.3
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 8.3e-86 320.9 238 71.4
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 8.3e-86 320.9 180 87.2
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.1e-85 320.5 171 90.6
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.1e-85 320.5 184 85.9
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.1e-85 320.5 224 74.6
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.8e-85 319.7 183 84.2
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 2.4e-85 319.3 216 75.0
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 2.4e-85 319.3 239 69.9
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 2.4e-85 319.3 233 73.4
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 4.1e-85 318.5 226 70.8
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 4.1e-85 318.5 206 75.2
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 5.4e-85 318.2 230 72.2
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 5.4e-85 318.2 237 71.7
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 7.0e-85 317.8 216 74.5
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 7.0e-85 317.8 216 74.5
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 7.0e-85 317.8 222 73.0
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 9.2e-85 317.4 225 73.3
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 9.2e-85 317.4 239 71.5
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 9.2e-85 317.4 224 74.6
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.2e-84 317.0 238 71.0
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.6e-84 316.6 186 82.8
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.0e-84 316.2 215 75.3
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 2.0e-84 316.2 187 82.9
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 2.7e-84 315.8 246 69.1
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 3.5e-84 315.5 191 81.7
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 4.6e-84 315.1 227 71.8
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 5.9e-84 314.7 225 74.7
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 5.9e-84 314.7 227 71.4
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 7.8e-84 314.3 225 72.9
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.0e-83 313.9 233 70.4
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 1.0e-83 313.9 185 85.4
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 1.3e-83 313.5 186 84.4
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.3e-83 313.5 187 81.3
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.7e-83 313.2 201 78.1
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 1.7e-83 313.2 227 70.9
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 2.3e-83 312.8 236 70.8
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 3.0e-83 312.4 193 81.3
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 3.0e-83 312.4 243 71.2
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 3.9e-83 312.0 244 69.3
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 5.0e-83 311.6 234 71.4
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 6.6e-83 311.2 242 69.0
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 6.6e-83 311.2 177 84.7
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 8.6e-83 310.8 192 81.8
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 8.6e-83 310.8 225 73.8
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.1e-82 310.5 192 81.8
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.1e-82 310.5 231 72.3
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 3.3e-82 308.9 177 84.2
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 5.6e-82 308.1 233 68.7
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 5.6e-82 308.1 243 71.2
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 7.3e-82 307.8 225 73.8
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 7.3e-82 307.8 225 73.8
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 9.5e-82 307.4 243 68.3
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-81 307.0 224 73.7
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 6.2e-81 304.7 196 77.6
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 1.8e-80 303.1 224 70.5
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 6.8e-80 301.2 226 69.5
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.2e-79 300.4 180 81.1
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 2.0e-79 299.7 194 75.8
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 1.3e-78 297.0 165 85.5
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.3e-78 297.0 185 78.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 2.2e-78 296.2 202 73.3
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 1.0e-75 287.3 216 66.2
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 6.6e-75 284.6 221 68.3
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.5e-74 282.7 201 75.1
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 7.5e-71 271.2 258 59.7
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.1e-69 267.3 198 67.7
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 2.4e-69 266.2 181 68.0
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.6e-68 263.5 215 65.1
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.3e-67 259.6 191 71.7
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.5e-66 256.9 180 72.2
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.9e-66 256.5 243 61.3
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 7.3e-66 254.6 232 62.1
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 5.8e-63 245.0 193 63.2
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 8.7e-59 231.1 154 73.4
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 6.2e-57 224.9 122 89.3
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 2.1e-49 199.9 134 73.1
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.8e-46 189.1 159 62.3
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.4e-46 188.0 168 64.3
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.4e-45 187.2 112 85.7
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 7.9e-44 181.4 143 65.0
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 1.5e-42 177.2 151 63.6
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 1.1e-40 171.0 104 80.8
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 1.4e-40 170.6 104 79.8
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 9.0e-40 167.9 115 71.3
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.7e-33 146.0 105 72.4
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.1e-32 142.9 78 89.7
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 9.0e-32 141.4 182 41.2
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 4.5e-31 139.0 124 60.5
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.0e-30 137.9 78 87.2
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.5e-29 132.1 71 94.4
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.7e-28 129.8 75 85.3
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 6.5e-22 108.6 77 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 2.5e-18 96.7 59 72.9
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.1e-16 91.3 92 56.5
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.8e-16 90.5 49 85.7
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.7e-10 68.9 47 68.1
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.1e-08 63.2 32 84.4
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 5.3e-08 62.4 114 40.4
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-07 60.8 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.5e-07 60.8 28 89.3
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 6.5e-06 55.5 47 57.4


User provided reference genes

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