Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 2.4e-168 595.5 314 100.0
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 5.0e-142 508.1 315 87.9
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 7.9e-132 474.2 315 83.8
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 4.4e-122 441.8 321 78.2
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 5.7e-122 441.4 318 77.4
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 7.5e-122 441.0 318 78.9
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 2.2e-121 439.5 315 79.0
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 3.5e-119 432.2 318 77.4
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 1.7e-118 429.9 278 83.5
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 3.8e-118 428.7 317 77.3
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 5.0e-118 428.3 314 75.8
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 6.5e-118 427.9 321 77.9
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.6e-116 423.3 275 84.4
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 3.6e-116 422.2 315 74.3
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 1.2e-114 417.2 314 73.6
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 4.4e-114 415.2 317 73.8
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 7.5e-114 414.5 315 73.3
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 3.7e-113 412.1 313 73.8
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 4.8e-113 411.8 313 72.8
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 4.8e-113 411.8 314 72.9
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 5.4e-112 408.3 313 74.1
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 7.0e-112 407.9 319 73.7
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 1.2e-111 407.1 311 72.3
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 1.2e-111 407.1 308 74.0
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 2.9e-110 402.5 309 72.5
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 2.9e-110 402.5 320 68.4
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 3.8e-110 402.1 314 71.7
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 1.5e-109 400.2 293 75.1
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.5e-109 400.2 313 73.2
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.2e-109 399.1 325 69.5
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 4.2e-109 398.7 297 71.4
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 9.4e-109 397.5 313 70.9
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 6.1e-108 394.8 266 80.5
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 8.0e-108 394.4 299 72.2
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 8.0e-108 394.4 295 74.6
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 1.0e-107 394.0 280 75.0
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.8e-107 393.3 318 67.3
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.8e-107 393.3 315 69.5
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 5.2e-107 391.7 280 74.6
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 6.8e-107 391.3 315 68.3
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 6.8e-107 391.3 329 64.1
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.2e-106 390.6 283 76.3
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 2.6e-106 389.4 315 71.4
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 2.6e-106 389.4 295 74.9
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 4.4e-106 388.7 314 70.1
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 5.7e-106 388.3 272 76.1
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 9.8e-106 387.5 328 63.4
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 1.3e-105 387.1 314 70.7
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 2.2e-105 386.3 278 75.5
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 4.9e-105 385.2 314 70.1
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 1.1e-104 384.0 251 83.3
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.4e-104 383.6 322 69.6
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 1.4e-104 383.6 314 70.7
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 2.4e-104 382.9 302 70.5
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.4e-104 382.9 297 69.0
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 4.1e-104 382.1 307 70.4
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 5.4e-104 381.7 301 70.8
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 5.4e-104 381.7 321 70.7
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.2e-103 380.6 322 67.4
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.6e-103 380.2 276 73.9
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 3.5e-103 379.0 276 72.8
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 4.5e-103 378.6 314 70.4
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 5.9e-103 378.3 301 67.8
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 5.9e-103 378.3 317 69.7
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 1.0e-102 377.5 279 72.8
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 2.3e-102 376.3 251 82.9
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 8.6e-102 374.4 304 66.8
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 1.1e-101 374.0 271 72.7
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 4.3e-101 372.1 271 73.4
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 1.2e-100 370.5 310 66.5
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 6.1e-100 368.2 319 66.8
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.8e-99 366.7 319 66.5
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 2.3e-99 366.3 268 74.3
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 2.3e-99 366.3 294 70.1
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 7.5e-98 361.3 250 74.8
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.4e-96 357.1 299 64.2
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 7.0e-96 354.8 320 63.1
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 7.0e-96 354.8 316 65.5
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.2e-95 354.0 400 53.0
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 1.2e-95 354.0 294 67.3
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 2.7e-95 352.8 306 68.3
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 4.6e-95 352.1 313 63.3
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.0e-94 350.9 266 70.7
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 3.9e-94 349.0 300 67.7
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 1.6e-92 343.6 317 62.5
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 4.7e-92 342.0 285 70.5
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 1.0e-91 340.9 228 75.0
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 1.4e-91 340.5 272 69.9
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 6.8e-91 338.2 270 68.5
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 9.8e-90 334.3 278 65.5
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 2.2e-89 333.2 228 75.9
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 2.2e-89 333.2 228 75.9
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 3.7e-89 332.4 255 68.2
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 4.9e-89 332.0 227 74.9
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 3.2e-88 329.3 314 64.3
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 4.1e-88 328.9 229 76.9
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 1.9e-85 320.1 266 61.3
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 2.3e-83 313.2 301 63.1
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.6e-82 309.7 232 72.8
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 3.7e-81 305.8 251 64.5
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 3.3e-77 292.7 187 80.7
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 6.8e-75 285.0 261 61.3
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 1.5e-74 283.9 321 54.5
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 2.0e-74 283.5 190 80.5
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 4.9e-73 278.9 289 57.4
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 1.0e-70 271.2 205 73.2
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.7e-65 253.8 177 77.4
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 8.4e-65 251.5 260 56.5
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 4.3e-61 239.2 268 49.3
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 2.4e-56 223.4 252 51.6
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 3.5e-55 219.5 290 45.9
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 5.8e-50 202.2 157 73.9
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 2.7e-47 193.4 192 54.2
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 1.4e-43 181.0 186 50.5
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 6.5e-41 172.2 131 67.2
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 1.1e-37 161.4 129 65.1
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 1.4e-35 154.5 115 77.4
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 2.2e-33 147.1 182 50.5
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 4.1e-27 126.3 101 68.3
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 5.3e-27 125.9 225 37.3
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 2.6e-26 123.6 120 57.5
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 5.7e-21 105.9 107 57.9
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 5.9e-18 95.9 80 66.2
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 1.3e-17 94.7 71 63.4
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 8.8e-14 82.0 124 46.0
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 2.0e-13 80.9 72 62.5
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 7.7e-10 68.9 65 61.5
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 2.9e-09 67.0 65 64.6
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.1e-08 65.1 162 33.3
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 1.9e-08 64.3 35 77.1
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 4.7e-07 59.7 46 71.7
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 5.2e-06 56.2 179 29.6
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 6.7e-06 55.8 49 63.3


User provided reference genes

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