Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010812 Sechium edule HOM05D000894 ORTHO05D025085 8.4e-94 347.1 181 100.0
Sed0019083 Sechium edule HOM05D000894 ORTHO05D025085 4.1e-72 275.0 177 80.2
ClCG05G015230 Citrullus lanatus HOM05D000894 ORTHO05D025085 1.9e-69 266.2 181 77.9
MELO3C017007.2 Cucumis melo HOM05D000894 ORTHO05D025085 1.6e-68 263.1 183 77.6
CsaV3_4G037090 Cucumis sativus L. HOM05D000894 ORTHO05D025085 1.1e-66 256.9 183 76.5
ClCG05G015220 Citrullus lanatus HOM05D000894 ORTHO05D002325 4.7e-36 155.2 120 71.7
MELO3C017008.2 Cucumis melo HOM05D000894 ORTHO05D002325 5.2e-35 151.8 107 74.8
CsaV3_4G037100 Cucumis sativus L. HOM05D000894 ORTHO05D002325 6.8e-35 151.4 110 71.8
Sed0000145 Sechium edule HOM05D000894 ORTHO05D002325 2.7e-31 139.4 111 65.8
Sed0000541 Sechium edule HOM05D000894 ORTHO05D002325 3.9e-30 135.6 110 64.5
RcHm_v2.0_Chr6g0303971 Rosa chinensis HOM05D000894 ORTHO05D002325 1.9e-29 133.3 118 59.3
Cfa014035 Carpinus fangiana HOM05D000894 ORTHO05D002325 4.3e-29 132.1 115 60.0
FvH4_2g37770 Fragaria vesca HOM05D000894 ORTHO05D002325 7.3e-29 131.3 118 58.5
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 7.3e-29 131.3 118 58.5
Prupe.1G356800 Prunus persica HOM05D000894 ORTHO05D002325 7.3e-29 131.3 117 57.3
Dinv39574 Davidia involucrata HOM05D000894 ORTHO05D002325 1.2e-28 130.6 120 59.2
FAN15G0127 Fragaria x ananassa HOM05D000894 ORTHO05D002325 2.1e-28 129.8 118 57.6
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.1e-28 129.8 118 57.6
BraA09t37568Z Brassica rapa HOM05D000894 ORTHO05D002325 6.2e-28 128.3 118 60.2
BcaC04g22008 Brassica carinata HOM05D000894 ORTHO05D002325 1.8e-27 126.7 118 59.3
BolC9t55382H Brassica oleracea HOM05D000894 ORTHO05D002325 1.8e-27 126.7 118 59.3
Thhalv10003631m.g Eutrema salsugineum HOM05D000894 ORTHO05D002325 1.8e-27 126.7 117 59.8
MD15G1004200 Malus domestica HOM05D000894 ORTHO05D002325 3.1e-27 125.9 117 55.6
Carub.0008s0704 Capsella rubella HOM05D000894 ORTHO05D002325 4.0e-27 125.6 117 58.1
BcaB07g31087 Brassica carinata HOM05D000894 ORTHO05D002325 5.2e-27 125.2 118 58.5
A09p19540 Brassica napus HOM05D000894 ORTHO05D002325 6.8e-27 124.8 118 59.3
CARHR184490 Cardamine hirsuta HOM05D000894 ORTHO05D002325 8.9e-27 124.4 117 57.3
AT5G42220 Arabidopsis thaliana HOM05D000894 ORTHO05D002325 1.2e-26 124.0 117 58.1
MD08G1004700 Malus domestica HOM05D000894 ORTHO05D002325 3.4e-26 122.5 117 53.8
QL02p013593 Quercus lobata HOM05D000894 ORTHO05D002325 4.4e-26 122.1 117 53.8
CANSAT25G1636 Cannabis sativa HOM05D000894 ORTHO05D002325 7.5e-26 121.3 117 53.0
Ciclev10000172m.g Citrus clementina HOM05D000894 ORTHO05D002325 1.3e-25 120.6 120 51.7
PGR083G1464 Punica granatum HOM05D000894 ORTHO05D002325 1.3e-25 120.6 112 55.4
CiPaw.07G141400 Carya illinoinensis HOM05D000894 ORTHO05D002325 2.2e-25 119.8 117 55.6
Rhsim06G0009500 Rhododendron simsii HOM05D000894 ORTHO05D002325 2.2e-25 119.8 117 54.7
GSVIVG01029432001 Vitis vinifera HOM05D000894 ORTHO05D002325 2.2e-25 119.8 116 52.6
CiPaw.08G071200 Carya illinoinensis HOM05D000894 ORTHO05D002325 2.9e-25 119.4 117 56.4
AL8G19490 Arabidopsis lyrata HOM05D000894 ORTHO05D002325 6.4e-25 118.2 117 56.4
Thecc.08G055200 Theobroma cacao HOM05D000894 ORTHO05D002325 8.3e-25 117.9 97 61.9
THA.LOC104809699 Tarenaya hassleriana HOM05D000894 ORTHO05D002325 1.1e-24 117.5 117 53.8
PSO541G1981 Papaver somniferum HOM05D000894 ORTHO05D002325 1.9e-24 116.7 99 59.6
COL.COLO4_21614 Corchorus olitorius HOM05D000894 ORTHO05D002325 7.0e-24 114.8 97 61.9
TAR625G0558 Trochodendron aralioides HOM05D000894 ORTHO05D002325 7.0e-24 114.8 117 51.3
Atru.chr13.174 Acer truncatum HOM05D000894 ORTHO05D002325 9.2e-24 114.4 91 62.6
PSO675G7487 Papaver somniferum HOM05D000894 ORTHO05D002325 9.2e-24 114.4 99 58.6
Nn5g30896 Nelumbo nucifera HOM05D000894 ORTHO05D002325 1.2e-23 114.0 107 53.3
MSTRG.1129 Avicennia marina HOM05D000894 ORTHO05D002325 2.1e-23 113.2 117 50.4
Haze_22740 Corylus avellana HOM05D000894 ORTHO05D002325 2.1e-23 113.2 145 46.9
ECA233G1071 Erigeron canadensis HOM05D000894 ORTHO05D002325 2.1e-23 113.2 114 56.1
Gorai.009G268000 Gossypium raimondii HOM05D000894 ORTHO05D002325 2.1e-23 113.2 92 60.9
TWI56G0050 Tripterygium wilfordii HOM05D000894 ORTHO05D002325 2.1e-23 113.2 134 50.0
Actinidia15476 Actinidia chinensis HOM05D000894 ORTHO05D002325 3.5e-23 112.5 117 53.0
Cpa.g.sc26.231 Carica papaya HOM05D000894 ORTHO05D002325 3.5e-23 112.5 113 54.9
Sc02g0008970 Simmondsia chinensis HOM05D000894 ORTHO05D002325 3.5e-23 112.5 120 50.0
CSS0020420 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 4.6e-23 112.1 114 54.4
Lj4C803T7 Lonicera japonica HOM05D000894 ORTHO05D002325 1.0e-22 110.9 113 52.2
Sabra02G0010500 Salix brachista HOM05D000894 ORTHO05D002325 1.3e-22 110.5 116 52.6
TAR381G0735 Trochodendron aralioides HOM05D000894 ORTHO05D002325 1.3e-22 110.5 120 50.0
Gohir.D05G256500 Gossypium hirsutum HOM05D000894 ORTHO05D002325 1.7e-22 110.2 92 59.8
Potri.002G013500 Populus trichocarpa HOM05D000894 ORTHO05D002325 1.7e-22 110.2 120 50.0
CSS0030543 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 2.3e-22 109.8 116 53.4
AUR62013832 Chenopodium quinoa HOM05D000894 ORTHO05D002325 2.3e-22 109.8 131 51.1
Duzib041G0349 Durio zibethinus HOM05D000894 ORTHO05D002325 2.3e-22 109.8 100 56.0
Gohir.A05G254900 Gossypium hirsutum HOM05D000894 ORTHO05D002325 2.3e-22 109.8 92 59.8
Manes.05G140700 Manihot esculenta HOM05D000894 ORTHO05D002325 2.3e-22 109.8 120 49.2
Hund05131 Selenicereus undatus HOM05D000894 ORTHO05D002325 2.3e-22 109.8 116 52.6
Sabra05G0191600 Salix brachista HOM05D000894 ORTHO05D002325 3.9e-22 109.0 117 50.4
AUR62036772 Chenopodium quinoa HOM05D000894 ORTHO05D002325 5.1e-22 108.6 117 53.8
Oeu025003.4 Olea europaea HOM05D000894 ORTHO05D002325 5.1e-22 108.6 117 51.3
Phvul.001G001400 Phaseolus vulgaris HOM05D000894 ORTHO05D002325 5.1e-22 108.6 119 47.9
Medtr1g026290 Medicago truncatula HOM05D000894 ORTHO05D002325 8.6e-22 107.8 119 51.3
Potri.005G247900 Populus trichocarpa HOM05D000894 ORTHO05D002325 8.6e-22 107.8 117 50.4
Oeu046333.2 Olea europaea HOM05D000894 ORTHO05D002325 1.1e-21 107.5 117 51.3
Gohir.A05G181200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 1.9e-21 106.7 92 57.6
Glyma.17G261600 Glycine max HOM05D000894 ORTHO05D002325 4.3e-21 105.5 130 47.7
HanXRQChr02g0048881 Helianthus annuus HOM05D000894 ORTHO05D002325 4.3e-21 105.5 110 51.8
Lalb_Chr03g0033601 Lupinus albus HOM05D000894 ORTHO05D002325 4.3e-21 105.5 116 49.1
Cc10_g00880 Coffea canephora HOM05D000894 ORTHO05D002325 5.6e-21 105.1 117 47.9
Glyma.14G223100 Glycine max HOM05D000894 ORTHO05D002325 5.6e-21 105.1 119 47.9
Nitab4.5_0000588g0330 Nicotiana tabacum HOM05D000894 ORTHO05D002325 5.6e-21 105.1 117 48.7
Lalb_Chr01g0008391 Lupinus albus HOM05D000894 ORTHO05D002325 9.5e-21 104.4 112 50.9
Ca_13492_v3 Cicer arietinum L. HOM05D000894 ORTHO05D002325 1.6e-20 103.6 118 46.6
Gorai.009G189700 Gossypium raimondii HOM05D000894 ORTHO05D002325 1.6e-20 103.6 92 55.4
Lalb_Chr19g0131691 Lupinus albus HOM05D000894 ORTHO05D002325 1.6e-20 103.6 117 47.9
Aa31LG9G12370 Aethionema arabicum HOM05D000894 ORTHO05D002325 2.8e-20 102.8 116 50.9
Peaxi162Scf00174g00159 Petunia axillaris HOM05D000894 ORTHO05D002325 2.8e-20 102.8 117 48.7
Aqoxy3G00355 Aquilegia oxysepala HOM05D000894 ORTHO05D002325 3.6e-20 102.4 89 56.2
arahy.Tifrunner.gnm1.ann1.LYL18I Arachis hypogaea HOM05D000894 ORTHO05D002325 3.6e-20 102.4 109 46.8
arahy.Tifrunner.gnm1.ann1.W1R3NJ Arachis hypogaea HOM05D000894 ORTHO05D002325 3.6e-20 102.4 109 46.8
Gohir.D05G184200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 3.6e-20 102.4 92 54.3
Lj5g0012630 Lotus japonicus HOM05D000894 ORTHO05D002325 3.6e-20 102.4 117 48.7
DCAR_013900 Daucus carota HOM05D000894 ORTHO05D002325 4.7e-20 102.1 117 49.6
Migut.N03195 Erythranthe guttata HOM05D000894 ORTHO05D002325 4.7e-20 102.1 117 48.7
HanXRQChr17g0533381 Helianthus annuus HOM05D000894 ORTHO05D002325 4.7e-20 102.1 117 47.0
EL10Ac1g02026 Beta vulgaris HOM05D000894 ORTHO05D002325 1.4e-19 100.5 89 59.6
CAN.G311.95 Capsicum annuum HOM05D000894 ORTHO05D002325 1.8e-19 100.1 117 46.2
HanXRQChr06g0165771 Helianthus annuus HOM05D000894 ORTHO05D002325 1.8e-19 100.1 114 49.1
TPR.G26410 Trifolium pratense HOM05D000894 ORTHO05D002325 1.8e-19 100.1 117 47.9
arahy.Tifrunner.gnm1.ann1.U1RN9D Arachis hypogaea HOM05D000894 ORTHO05D002325 2.3e-19 99.8 107 46.7
Duzib093G2095 Durio zibethinus HOM05D000894 ORTHO05D002325 2.3e-19 99.8 92 55.4
Psat6g000200 Pisum sativum HOM05D000894 ORTHO05D002325 3.1e-19 99.4 119 46.2
MBI08_g26493_MAGBIO Magnolia biondii HOM05D000894 ORTHO05D002325 4.0e-19 99.0 152 44.1
Psat5g002040 Pisum sativum HOM05D000894 ORTHO05D002325 4.0e-19 99.0 119 46.2
SGA_v2.0_scaffold19G08600 Striga asiatica HOM05D000894 ORTHO05D002325 4.0e-19 99.0 117 45.3
Lsat_1_v5_gn_3_7681 Lactuca sativa HOM05D000894 ORTHO05D002325 5.2e-19 98.6 117 46.2
ECA246G4835 Erigeron canadensis HOM05D000894 ORTHO05D002325 6.8e-19 98.2 125 44.0
SGA_v2.0_scaffold25G11192 Striga asiatica HOM05D000894 ORTHO05D002325 6.8e-19 98.2 116 47.4
Eucgr.F01713 Eucalyptus grandis HOM05D000894 ORTHO05D002325 1.5e-18 97.1 112 48.2
Ah.11g040680 Amaranthus hybridus HOM05D000894 ORTHO05D002325 2.0e-18 96.7 117 47.0
Hma1.2p1_1260F.1_g271030 Hydrangea macrophylla HOM05D000894 ORTHO05D002325 3.4e-18 95.9 116 47.4
Solyc04g082160.4 Solanum lycopersicum HOM05D000894 ORTHO05D002325 4.4e-18 95.5 98 50.0
Sopen04g035790 Solanum pennellii HOM05D000894 ORTHO05D002325 4.4e-18 95.5 98 50.0
CDE02G0614 Ceratophyllum demersum HOM05D000894 ORTHO05D002325 8.3e-17 91.3 118 44.1
CDE09G0453 Ceratophyllum demersum HOM05D000894 ORTHO05D002325 1.1e-16 90.9 118 44.9
PGSC0003DMG400009894 Solanum tuberosum HOM05D000894 ORTHO05D002325 1.1e-16 90.9 98 48.0
Psat7g195400 Pisum sativum HOM05D000894 ORTHO05D002325 1.9e-16 90.1 111 47.7
HPP92_026892 Vanilla planifolia HOM05D000894 ORTHO05D002325 1.2e-15 87.4 82 51.2
HPP92_003494 Vanilla planifolia HOM05D000894 ORTHO05D002325 3.5e-15 85.9 82 50.0
ATR0661G248 Amborella trichopoda HOM05D000894 ORTHO05D002325 1.0e-14 84.3 86 50.0
Lsat_1_v5_gn_8_119281 Lactuca sativa HOM05D000894 ORTHO05D002325 1.0e-14 84.3 100 49.0
unitig_32.g11246 Utricularia gibba HOM05D000894 ORTHO05D002325 1.7e-14 83.6 86 51.2
MSTRG.1732 Avicennia marina HOM05D000894 ORTHO05D002325 1.5e-10 70.5 89 43.8
Zm00001eb198450 Zea mays HOM05D000894 ORTHO05D002325 2.6e-10 69.7 118 35.6
SHI08006 Sapria himalayana HOM05D000894 ORTHO05D002325 9.9e-10 67.8 92 37.0
vmacro11206 Vaccinium macrocarpon HOM05D000894 ORTHO05D002325 4.9e-09 65.5 85 38.8
Mapoly0067s0004 Marchantia polymorpha HOM05D000894 ORTHO05D002325 8.4e-09 64.7 79 44.3
TAR625G0898 Trochodendron aralioides HOM05D000894 ORTHO05D002325 1.1e-08 64.3 86 38.4
Rhsim02G0205100 Rhododendron simsii HOM05D000894 ORTHO05D002325 1.9e-08 63.5 85 37.6
Manes.16G125500 Manihot esculenta HOM05D000894 ORTHO05D002325 2.4e-08 63.2 89 37.1
Glyma.17G106000 Glycine max HOM05D000894 ORTHO05D002325 9.3e-08 61.2 88 35.2
Psat4g035360 Pisum sativum HOM05D000894 ORTHO05D002325 9.3e-08 61.2 108 30.6
Duzib168G0818 Durio zibethinus HOM05D000894 ORTHO05D002325 1.2e-07 60.8 83 38.6
TAR636G0605 Trochodendron aralioides HOM05D000894 ORTHO05D002325 1.6e-07 60.5 82 39.0
Potri.006G059700 Populus trichocarpa HOM05D000894 ORTHO05D002325 2.1e-07 60.1 81 38.3
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 3.5e-07 59.3 71 39.4
SGA_v2.0_scaffold163G37960 Striga asiatica HOM05D000894 ORTHO05D002325 3.5e-07 59.3 80 40.0
DCAR_006203 Daucus carota HOM05D000894 ORTHO05D002325 4.6e-07 58.9 85 37.6
Lj4g0017820 Lotus japonicus HOM05D000894 ORTHO05D002325 6.0e-07 58.5 88 35.2
Nitab4.5_0005958g0040 Nicotiana tabacum HOM05D000894 ORTHO05D002325 6.0e-07 58.5 86 38.4
GSVIVG01035929001 Vitis vinifera HOM05D000894 ORTHO05D002325 6.0e-07 58.5 85 35.3
Duzib150G0541 Durio zibethinus HOM05D000894 ORTHO05D002325 7.8e-07 58.2 83 38.6
SMO364G0659 Selaginella moellendorffii HOM05D000894 ORTHO05D002325 7.8e-07 58.2 88 40.9
vmacro21837 Vaccinium macrocarpon HOM05D000894 ORTHO05D002325 1.3e-06 57.4 70 37.1
COL.COLO4_24118 Corchorus olitorius HOM05D000894 ORTHO05D002325 1.7e-06 57.0 83 37.3
Dinv18181 Davidia involucrata HOM05D000894 ORTHO05D002325 1.7e-06 57.0 85 35.3
Aqoxy7G03557 Aquilegia oxysepala HOM05D000894 ORTHO05D002325 2.3e-06 56.6 140 29.3
CSS0044890 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 2.3e-06 56.6 71 38.0
CSS0023523 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 3.0e-06 56.2 83 34.9
Ca_21622_v3 Cicer arietinum L. HOM05D000894 ORTHO05D002325 3.0e-06 56.2 88 34.1
Ciclev10007581m.g Citrus clementina HOM05D000894 ORTHO05D002325 3.0e-06 56.2 83 34.9
Migut.E01818 Erythranthe guttata HOM05D000894 ORTHO05D002325 3.0e-06 56.2 97 34.0
MBI14_g03624_MAGBIO Magnolia biondii HOM05D000894 ORTHO05D002325 3.0e-06 56.2 81 40.7
Oeu036215.1 Olea europaea HOM05D000894 ORTHO05D002325 3.0e-06 56.2 86 34.9
VMungo1215G1990 Vigna mungo HOM05D000894 ORTHO05D002325 3.0e-06 56.2 83 34.9
Nitab4.5_0002992g0030 Nicotiana tabacum HOM05D000894 ORTHO05D002325 3.9e-06 55.8 86 36.0
Peaxi162Scf00116g01011 Petunia axillaris HOM05D000894 ORTHO05D002325 5.1e-06 55.5 94 33.0
Pp3c1_29440 Physcomitrium patens HOM05D000894 ORTHO05D002325 5.1e-06 55.5 84 38.1
Nn8g39683 Nelumbo nucifera HOM05D000894 ORTHO05D002325 6.6e-06 55.1 83 34.9
Phvul.003G173700 Phaseolus vulgaris HOM05D000894 ORTHO05D002325 6.6e-06 55.1 84 33.3
Dinv15884 Davidia involucrata HOM05D000894 ORTHO05D002325 8.7e-06 54.7 94 33.0
Gohir.A06G051100 Gossypium hirsutum HOM05D000894 ORTHO05D002325 8.7e-06 54.7 83 36.1
Gohir.D06G050200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 8.7e-06 54.7 83 36.1
Gohir.D13G208200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 8.7e-06 54.7 83 36.1
Gorai.010G057100 Gossypium raimondii HOM05D000894 ORTHO05D002325 8.7e-06 54.7 83 36.1
Gorai.013G237300 Gossypium raimondii HOM05D000894 ORTHO05D002325 8.7e-06 54.7 83 36.1


User provided reference genes

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