Gene: AT5G42220

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G42220
  • Transcript Identifier AT5G42220.2
  • Gene Type Coding gene
  • Location Chr5 : 16872962-16877455 : positive

Gene Family Information

  • ID HOM05D000894
  • #Genes/#Species 670/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G42220.2
  • uniprot Q8L745

Descriptions

  • Description Ubiquitin-like superfamily protein
  • Computational description Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1); Has 12270 Blast hits to 6672 proteins in 779 species: Archae - 2; Bacteria - 272; Metazoa - 5255; Fungi - 1469; Plants - 2655; Viruses - 175; Other Eukaryotes - 2442 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030433
IBA
Gene Ontologyubiquitin-dependent ERAD pathway1
GO:0006412
ISO
PLAZA Homology (enrichment)translation HOM05D000894

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031593
IBA
Gene Ontologypolyubiquitin modification-dependent protein binding1
GO:0051787
IBA
Gene Ontologymisfolded protein binding1
GO:0005515
IEA
InterProprotein binding
GO:0003735
ISO
PLAZA Homology (enrichment)structural constituent of ribosome HOM05D000894

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0071818
IBA
Gene OntologyBAT3 complex1
GO:0005829
IDA
GOA Databasecytosol
GO:0005840
ISO
PLAZA Homology (enrichment)ribosome HOM05D000894

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029071 Ubiquitin-like domain superfamily
IPR000626 Ubiquitin-like domain
IPR019956 Ubiquitin domain
Mapman id Description
35.1 not assigned.annotated