Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 3.7e-158 561.6 304 100.0
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.9e-155 551.2 304 97.4
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.9e-155 551.2 304 97.4
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.1e-154 550.1 304 97.4
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.5e-154 548.9 304 97.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.3e-152 543.1 304 96.4
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 3.6e-137 491.9 308 84.4
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 8.8e-136 487.3 304 86.2
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 2.6e-135 485.7 304 84.2
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 7.4e-135 484.2 308 83.8
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.7e-134 481.9 302 85.8
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.4e-133 479.9 306 81.7
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 2.4e-133 479.2 304 82.9
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 3.1e-133 478.8 306 82.0
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 3.1e-133 478.8 304 82.6
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 4.1e-133 478.4 318 81.1
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 7.0e-133 477.6 303 83.5
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 5.9e-132 474.6 305 79.7
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 5.9e-132 474.6 304 83.2
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.3e-131 473.4 304 83.6
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.2e-131 472.6 304 83.9
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.2e-131 472.6 304 83.9
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.2e-131 472.6 306 81.4
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 2.2e-131 472.6 305 82.3
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 6.5e-131 471.1 303 82.5
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 1.1e-130 470.3 304 80.6
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.1e-130 470.3 306 82.7
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.5e-130 469.9 304 82.2
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.5e-130 469.2 304 83.9
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 2.5e-130 469.2 305 79.7
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 3.2e-130 468.8 306 84.6
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 9.4e-130 467.2 305 80.7
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.2e-129 466.8 305 80.3
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.7e-129 465.7 305 84.3
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 4.7e-129 464.9 304 79.6
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 4.7e-129 464.9 304 83.2
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 6.1e-129 464.5 304 80.3
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.8e-128 463.0 305 82.3
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 2.3e-128 462.6 305 82.0
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 2.3e-128 462.6 305 81.6
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 3.0e-128 462.2 305 77.7
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 3.9e-128 461.8 298 81.9
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 5.2e-128 461.5 305 82.6
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 5.2e-128 461.5 305 82.6
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 6.7e-128 461.1 304 82.6
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 6.7e-128 461.1 306 81.7
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 6.7e-128 461.1 306 81.7
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 6.7e-128 461.1 306 81.7
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 8.8e-128 460.7 303 83.2
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.1e-127 460.3 304 79.6
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.5e-127 459.9 305 79.7
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 2.0e-127 459.5 304 82.6
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 3.3e-127 458.8 304 79.3
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.4e-127 458.4 307 82.1
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 5.7e-127 458.0 305 82.3
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 7.4e-127 457.6 304 82.6
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 9.7e-127 457.2 303 79.9
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 1.7e-126 456.4 304 81.2
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.7e-126 456.4 304 80.3
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 2.2e-126 456.1 306 80.7
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 2.8e-126 455.7 304 77.3
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 2.8e-126 455.7 304 78.3
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 3.7e-126 455.3 304 78.6
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 6.3e-126 454.5 302 80.1
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 6.3e-126 454.5 304 78.3
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 8.2e-126 454.1 304 77.0
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 8.2e-126 454.1 302 78.1
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.1e-125 453.8 304 80.9
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 4.1e-125 451.8 304 79.9
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 5.3e-125 451.4 304 81.2
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 7.0e-125 451.1 304 78.0
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 9.1e-125 450.7 304 78.0
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.6e-124 449.9 304 79.9
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 2.0e-124 449.5 304 78.0
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 2.0e-124 449.5 304 76.3
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.6e-124 449.1 302 76.8
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 7.7e-124 447.6 304 78.0
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.0e-123 447.2 305 77.0
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.0e-123 447.2 304 80.6
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.0e-123 447.2 304 78.0
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 5.0e-123 444.9 289 79.6
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 5.5e-122 441.4 303 75.6
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.1e-121 439.5 305 74.8
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.6e-121 438.7 304 77.0
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 8.0e-121 437.6 304 78.0
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.0e-120 437.2 304 78.9
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 2.3e-120 436.0 304 76.3
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 5.2e-120 434.9 304 74.7
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 6.8e-120 434.5 304 75.3
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 2.0e-119 433.0 304 78.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.0e-119 433.0 298 76.8
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.6e-119 432.6 304 75.0
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 4.4e-119 431.8 304 77.6
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.3e-118 430.3 304 75.0
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 4.8e-118 428.3 304 77.0
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 7.0e-117 424.5 304 76.3
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 7.0e-117 424.5 304 75.7
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.6e-116 423.3 313 72.2
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 2.0e-116 422.9 304 74.3
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 4.5e-116 421.8 304 73.7
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 4.5e-116 421.8 305 77.4
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.0e-115 420.6 304 74.7
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.0e-115 420.6 304 74.7
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.0e-115 420.6 304 74.7
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.0e-115 420.6 304 72.4
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.0e-115 420.6 304 76.3
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.7e-115 419.9 304 72.7
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.2e-115 419.5 301 77.7
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 3.8e-115 418.7 304 72.7
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.1e-109 400.6 312 69.9
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-108 397.1 282 77.7
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 9.5e-106 387.5 304 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 3.0e-104 382.5 306 67.0
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 7.8e-100 367.9 305 67.5
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 7.8e-100 367.9 293 70.3
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.1e-98 364.0 305 63.6
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 3.2e-93 345.9 323 62.2
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.3e-90 335.9 305 59.0
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 3.6e-89 332.4 195 81.5
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.6e-84 315.5 254 70.5
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.8e-81 306.2 300 56.0
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.8e-80 303.5 304 58.6
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 3.1e-80 302.8 254 65.4
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.1e-80 302.8 307 55.4
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.2e-76 290.8 304 57.9
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.1e-68 263.5 134 96.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.1e-68 263.5 303 51.2
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 9.9e-63 244.6 198 69.7
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.1e-61 238.4 271 55.0
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 3.6e-57 226.1 193 67.4
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 2.4e-56 223.4 204 64.2
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 6.7e-51 205.3 195 61.5
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 4.0e-48 196.1 313 43.1
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.0e-47 193.7 169 69.8
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 2.6e-47 193.4 296 45.3
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.8e-47 192.2 195 58.5
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 2.5e-42 176.8 230 46.1
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 2.8e-41 173.3 199 48.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 3.1e-40 169.9 111 78.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 9.3e-37 158.3 104 73.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 8.2e-33 145.2 172 48.8
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 2.2e-30 137.1 262 44.7
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 1.9e-29 134.0 102 64.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.9e-21 107.5 77 68.8
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 4.2e-21 106.3 149 50.3
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 4.2e-21 106.3 77 67.5
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 2.7e-20 103.6 304 33.6
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 4.7e-20 102.8 61 77.0
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 6.1e-20 102.4 304 33.2
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 8.8e-19 98.6 66 71.2
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.3e-17 94.7 118 60.2
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 9.1e-16 88.6 117 53.0
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-13 80.9 99 54.5
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 2.7e-12 77.0 98 54.1
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 3.0e-11 73.6 62 71.0
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 3.0e-11 73.6 146 41.8


User provided reference genes

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