Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.1e-162 576.6 314 100.0
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 2.5e-133 479.2 313 76.4
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 9.4e-133 477.2 315 77.1
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.1e-117 427.2 344 73.5
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 9.8e-98 360.9 262 65.6
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 4.1e-96 355.5 262 65.3
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 4.1e-96 355.5 260 64.2
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 5.4e-96 355.1 315 56.5
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 5.4e-96 355.1 261 65.1
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 7.0e-96 354.8 314 57.6
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.2e-95 354.0 262 63.7
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.7e-94 350.1 263 63.1
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 6.2e-92 341.7 263 62.7
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 2.3e-91 339.7 246 64.6
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 3.1e-91 339.3 262 64.1
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 5.2e-91 338.6 315 55.6
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 8.9e-91 337.8 315 54.3
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 2.6e-90 336.3 259 62.5
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 4.4e-90 335.5 317 53.6
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 4.4e-90 335.5 262 63.0
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 4.4e-90 335.5 257 61.9
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 7.5e-90 334.7 313 54.3
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.3e-89 334.0 264 61.0
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.7e-89 333.6 315 54.0
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 2.2e-89 333.2 262 62.6
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 3.7e-89 332.4 257 60.3
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 4.9e-89 332.0 257 61.5
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 4.9e-89 332.0 260 62.7
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 6.4e-89 331.6 245 63.3
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 8.3e-89 331.3 317 53.3
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.1e-88 330.9 251 62.2
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 2.4e-88 329.7 261 63.2
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.4e-88 329.7 261 63.2
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.1e-88 328.9 261 63.2
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 5.4e-88 328.6 315 54.6
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 5.4e-88 328.6 262 61.8
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.2e-87 327.4 262 60.7
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 4.6e-87 325.5 245 62.4
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 4.6e-87 325.5 258 61.2
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 4.6e-87 325.5 258 60.9
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 6.0e-87 325.1 258 61.2
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 1.7e-86 323.6 245 62.0
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.7e-86 323.6 262 60.3
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 2.3e-86 323.2 327 59.6
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.3e-86 323.2 262 57.6
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 2.3e-86 323.2 317 52.7
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.0e-86 322.8 257 61.9
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 3.9e-86 322.4 259 61.0
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 5.0e-86 322.0 327 59.3
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 5.0e-86 322.0 259 60.6
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 5.0e-86 322.0 259 60.6
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 5.0e-86 322.0 259 60.6
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 5.0e-86 322.0 259 58.7
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 5.0e-86 322.0 265 60.0
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 6.6e-86 321.6 262 61.5
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 8.6e-86 321.2 263 58.9
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 8.6e-86 321.2 259 57.9
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 1.5e-85 320.5 259 60.2
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.5e-85 319.7 259 60.2
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.5e-85 319.7 245 61.6
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 2.5e-85 319.7 260 61.2
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.3e-85 319.3 261 61.7
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 4.3e-85 318.9 244 61.5
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 7.3e-85 318.2 245 61.2
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 7.3e-85 318.2 316 52.2
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 7.3e-85 318.2 258 60.9
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 7.3e-85 318.2 259 59.1
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 9.5e-85 317.8 259 59.8
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 9.5e-85 317.8 259 59.8
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 9.5e-85 317.8 259 57.9
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.2e-84 317.4 259 57.5
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 1.2e-84 317.4 259 57.5
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.6e-84 317.0 258 60.9
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.6e-84 317.0 266 57.9
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 2.1e-84 316.6 259 59.5
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 2.8e-84 316.2 257 61.1
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.8e-84 316.2 256 60.5
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 3.6e-84 315.8 311 51.4
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 4.7e-84 315.5 312 52.9
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 8.1e-84 314.7 259 59.1
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 8.1e-84 314.7 255 57.6
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 2.3e-83 313.2 260 56.9
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 3.1e-83 312.8 258 57.4
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 5.2e-83 312.0 248 56.0
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 6.8e-83 311.6 237 62.9
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 6.8e-83 311.6 316 50.6
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.2e-82 310.8 259 55.2
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.2e-82 310.8 314 56.7
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 2.0e-82 310.1 258 57.0
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.6e-82 309.7 372 46.0
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 4.4e-82 308.9 259 59.5
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 2.9e-81 306.2 259 56.8
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.9e-80 303.5 246 58.5
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 2.4e-80 303.1 263 56.7
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.5e-77 293.9 314 51.9
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 5.6e-77 292.0 219 64.8
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 5.6e-77 292.0 261 55.2
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 7.3e-77 291.6 308 48.7
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 9.5e-77 291.2 234 59.4
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.2e-76 290.8 248 57.3
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 4.7e-76 288.9 320 48.4
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 5.2e-75 285.4 234 56.4
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 8.4e-73 278.1 317 48.9
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.4e-72 277.3 218 61.9
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.7e-70 270.4 210 65.7
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 3.0e-70 269.6 214 62.1
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 3.3e-69 266.2 237 57.0
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.3e-65 254.2 268 48.9
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 9.3e-64 248.1 267 47.2
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.1e-56 224.6 215 52.1
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 3.2e-56 223.0 261 43.7
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.3e-54 216.9 261 47.1
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 3.0e-54 216.5 240 48.8
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 6.6e-54 215.3 257 45.5
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 1.5e-53 214.2 242 48.3
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.5e-50 204.1 245 46.9
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 1.9e-48 197.2 334 36.2
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 2.7e-47 193.4 222 48.2
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 2.7e-47 193.4 222 43.7
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 7.4e-45 185.3 310 36.8
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 3.7e-44 183.0 203 48.3
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 4.0e-43 179.5 198 49.5
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 7.9e-39 165.2 211 39.3
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.9e-37 160.6 161 52.2
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 5.7e-37 159.1 226 42.0
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 9.6e-37 158.3 127 56.7
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 4.1e-35 152.9 215 40.9
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 3.4e-34 149.8 192 44.3
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 5.0e-33 146.0 240 37.5
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 2.3e-30 137.1 104 62.5
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.5e-29 134.4 107 57.9
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 2.2e-28 130.6 204 41.2
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 3.7e-28 129.8 107 61.7
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.4e-27 127.1 152 44.1
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.2e-25 120.6 256 33.2
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.5e-18 97.8 192 30.2
Cfa026181 Carpinus fangiana HOM05D002398 ORTHO05D000038 2.0e-13 80.9 276 24.3
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.3e-12 78.2 192 28.6
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 3.8e-09 66.6 45 57.8
Cre03.g181650 Chlamydomonas reinhardtii HOM05D005396 ORTHO05D006400 4.0e-06 56.6 151 23.8
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.2e-06 56.2 40 52.5
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 6.7e-06 55.8 107 33.6


User provided reference genes

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