Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 9.6e-281 969.5 502 100.0
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 1.3e-224 783.1 509 81.5
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 5.8e-193 677.9 486 75.3
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 7.6e-185 651.0 414 82.9
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 3.4e-161 572.4 513 62.8
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 4.2e-159 565.5 514 61.3
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 6.0e-158 561.6 503 61.6
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.3e-155 553.9 519 60.1
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 1.6e-155 553.5 509 58.0
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.8e-155 552.7 513 59.8
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.5e-153 547.0 514 58.2
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 2.6e-153 546.2 503 60.2
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.0e-152 544.3 476 63.2
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.3e-152 543.9 506 58.5
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.3e-152 543.9 521 60.1
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.4e-151 540.4 509 60.3
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 3.2e-151 539.3 510 58.6
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 5.5e-151 538.5 478 62.6
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 3.0e-149 532.7 522 60.2
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 1.5e-148 530.4 519 57.6
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 5.7e-148 528.5 528 56.8
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 2.4e-146 523.1 513 57.7
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 4.1e-146 522.3 510 57.5
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 2.2e-144 516.5 518 58.5
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 3.7e-139 499.2 510 57.8
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.4e-138 497.3 512 54.5
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 9.1e-138 494.6 548 53.6
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 1.2e-137 494.2 540 54.3
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 2.6e-137 493.0 456 58.3
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 7.7e-137 491.5 527 53.9
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.7e-136 490.3 500 56.6
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.4e-135 487.3 504 57.5
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 7.2e-135 485.0 495 55.8
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.1e-134 483.4 538 53.5
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 3.0e-133 479.6 516 53.9
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.1e-132 477.6 498 54.8
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.5e-132 477.2 559 49.7
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 2.6e-132 476.5 505 53.7
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.7e-131 473.8 505 55.4
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.2e-131 473.4 457 57.1
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 2.8e-131 473.0 498 54.0
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.8e-131 472.2 518 49.8
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.4e-130 470.7 394 64.7
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 9.1e-130 468.0 510 54.9
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 2.6e-129 466.5 515 50.1
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 4.5e-129 465.7 516 51.7
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 1.7e-128 463.8 509 53.0
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.2e-128 463.4 498 53.8
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.9e-127 460.3 498 52.8
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.5e-127 459.9 522 51.1
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 9.4e-127 458.0 332 71.7
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 2.7e-126 456.4 554 48.7
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 8.8e-125 451.4 565 49.0
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.5e-124 450.7 538 49.6
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 7.5e-124 448.4 508 50.6
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 9.7e-124 448.0 464 53.4
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.3e-123 447.6 522 51.3
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 4.8e-123 445.7 494 51.6
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 2.0e-121 440.3 459 54.0
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 5.9e-121 438.7 542 47.0
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.3e-120 437.6 372 59.9
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 2.9e-120 436.4 379 60.7
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 6.5e-120 435.3 502 50.8
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 8.5e-120 434.9 486 49.8
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 9.4e-119 431.4 530 48.3
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 6.1e-118 428.7 517 48.7
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 8.0e-118 428.3 514 50.2
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 5.4e-114 415.6 463 52.7
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.2e-113 414.5 339 63.7
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 2.0e-113 413.7 467 51.4
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 2.3e-112 410.2 506 50.2
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 2.9e-112 409.8 533 48.6
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 3.8e-112 409.5 572 45.1
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.1e-111 407.9 364 57.7
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 1.5e-111 407.5 466 49.8
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 5.5e-111 405.6 353 60.6
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 1.2e-110 404.4 364 59.3
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 2.8e-110 403.3 494 48.8
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 8.0e-110 401.7 507 48.7
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 3.0e-109 399.8 465 52.9
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.2e-108 397.9 493 47.3
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 7.5e-108 395.2 407 51.8
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.9e-107 392.5 451 49.2
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 8.3e-107 391.7 373 56.0
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.6e-105 387.5 412 53.2
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 5.9e-105 385.6 415 52.0
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 4.0e-101 372.9 423 53.7
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 2.0e-97 360.5 532 42.5
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.3e-96 357.8 481 48.0
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 3.0e-88 330.1 409 47.9
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.5e-87 327.0 385 53.5
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.7e-83 314.3 339 53.1
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.3e-83 312.0 380 52.1
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 4.6e-81 306.2 317 55.2
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.0e-80 305.1 474 41.6
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.8e-78 297.0 218 68.3
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 4.7e-78 296.2 404 40.8
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 4.7e-78 296.2 186 76.9
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.4e-77 293.9 358 46.9
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.4e-77 293.9 296 54.1
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.9e-75 287.0 307 52.8
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 8.4e-75 285.4 467 40.5
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 5.8e-68 262.7 249 55.8
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.6e-65 254.6 288 51.4
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 2.1e-65 254.2 451 36.8
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.4e-61 241.5 278 49.3
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 1.2e-60 238.4 278 47.5
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.4e-60 236.9 277 46.9
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.7e-59 234.6 185 64.3
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 3.8e-59 233.4 318 42.5
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 9.3e-58 228.8 197 57.9
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 9.3e-58 228.8 295 47.8
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.7e-57 227.3 269 50.6
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.0e-56 225.3 144 73.6
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.0e-56 225.3 278 44.6
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 3.3e-55 220.3 154 70.1
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 4.0e-53 213.4 281 44.1
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.4e-52 210.3 167 62.3
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.5e-52 209.9 317 41.3
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 1.7e-51 208.0 317 41.3
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 3.8e-51 206.8 289 42.6
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 6.4e-51 206.1 196 59.7
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 2.1e-49 201.1 168 60.1
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 6.0e-49 199.5 167 60.5
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.0e-48 198.7 303 40.3
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-47 195.3 282 40.4
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 1.5e-47 194.9 165 60.0
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 7.6e-44 182.6 121 71.9
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.1e-42 178.7 181 51.4
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 1.1e-39 168.7 181 50.8
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 9.7e-39 165.6 191 51.8
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 4.2e-34 150.2 287 35.5
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.5e-31 141.7 253 34.4
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 5.7e-31 139.8 105 70.5
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 8.2e-30 136.0 414 26.1
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.4e-29 135.2 191 38.7
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.1e-29 133.7 115 62.6
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 6.9e-29 132.9 142 52.1
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.7e-23 113.2 171 39.2
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 3.7e-22 110.5 284 33.1
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-20 105.5 94 51.1
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 4.5e-20 103.6 95 50.5
MELO3C013426.2 Cucumis melo HOM05D033314 ORTHO05D029171 1.5e-18 98.6 119 52.1
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.9e-18 98.2 178 34.3
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 8.0e-17 92.8 88 50.0
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 3.0e-16 90.9 63 66.7
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 6.7e-16 89.7 53 69.8
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 4.8e-14 83.6 66 59.1
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 2.0e-12 78.2 134 38.8
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.0e-11 75.9 133 38.3
QL05p021244 Quercus lobata HOM05D001353 ORTHO05D029171 1.2e-09 68.9 92 52.2
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 1.6e-09 68.6 101 42.6
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.0e-08 65.9 40 75.0
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 1.0e-08 65.9 147 34.7
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 5.2e-08 63.5 35 82.9
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 2.6e-07 61.2 30 90.0


User provided reference genes

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