Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sed0028015 LG12 - View
Sed0008742 LG06 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G3360 LG-8 + View
Acer truncatum Atru.chr7.1420 chr7 + View
Acer truncatum Atru.chr1.3457 chr1 + View
Actinidia chinensis Actinidia20405 Lachesis_group18 + View
Actinidia chinensis Actinidia32713 Lachesis_group27 + View
Actinidia chinensis Actinidia21695 Lachesis_group1 - View
Arabidopsis lyrata AL3G28920 scaffold_3 + View
Avicennia marina MSTRG.11044 ScioBoG_14204_HRSCAF_14270 - View
Aquilegia oxysepala Aqoxy7G01509 CHR07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.K0TTLC K18666 - activating signal cointegrator complex subunit 1 (ASCC1) arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8T8ZNV K18666 - activating signal cointegrator complex subunit 1 (ASCC1) arahy.Tifrunner.gnm1.Arahy.07 + View
Arabidopsis thaliana AT3G16220 Putative eukaryotic LigT Predicted eukaryotic LigT%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Predicted eukaryotic LigT (InterPro:IPR009210)%2C Protein kinase A anchor protein%2C nuclear localisation signal domain (InterPro:IPR019510)%3B BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16230.3)%3B Has 246 Blast hits to 244 proteins in 87 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 165%3B Fungi - 11%3B Plants - 39%3B Viruses - 0%3B Other Eukaryotes - 31 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaB04g18890 ChrB04 + View
Brassica carinata BcaC09g48591 ChrC09 + View
Brassica carinata BcaC01g03832 ChrC01 - View
Brassica napus C03p48160 C03 + View
Brassica napus A03p39730 A03 + View
Brassica napus C01p48010 C01 - View
Brassica napus A01p37890 A01 - View
Brassica oleracea BolC3t17094H C3 + View
Brassica rapa BraA01t03849Z A01 - View
Beta vulgaris EL10Ac9g22047 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) Chr9_EL10_PGA_scaffold8 - View
Camellia sinensis var. sinensis CSS0044224 PREDICTED: uncharacterized protein LOC100266864 [Vitis vinifera] Chr2 + View
Capsicum annuum CAN.G438.39 PGAv.1.6.scaffold438 + View
Cannabis sativa CANSAT56G0514 NC_044371.1 + View
Cicer arietinum L. Ca_01153_v3 Ca_LG1_v3 - View
Corylus avellana Haze_25790 Similar to At2g20050/At2g20040: Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein (Arabidopsis thaliana OX%3D3702) 8 + View
Corylus avellana Haze_16338 Similar to JGB: Protein JINGUBANG (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc04_g02860 Predicted eukaryotic LigT chr4 - View
Coffea canephora Cc06_g10150 Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein chr6 + View
Citrus clementina Ciclev10025383m.g scaffold_7 - View
Citrus clementina Ciclev10007299m.g scaffold_1 + View
Ceratophyllum demersum CDE05G3629 3 + View
Ceratophyllum demersum CDE05G1729 3 + View
Carpinus fangiana Cfa002108 Cfa01 + View
Carpinus fangiana Cfa003217 Cfa01 - View
Cardamine hirsuta CARHR091410 Activating signal cointegrator 1 complex subunit Chr3 + View
Carya illinoinensis CiPaw.01G234100 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) Chr01 - View
Citrullus lanatus ClCG09G001840 Activating signal cointegrator 1 complex subunit CG_Chr09 - View
Cucumis melo MELO3C024635.2 protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 chr02 + View
Cucumis melo MELO3C024262.2 activating signal cointegrator 1 complex subunit 1 chr01 + View
Chenopodium quinoa AUR62031870 Ascc1: Activating signal cointegrator 1 complex subunit 1 C_Quinoa_Scaffold_1810 + View
Chenopodium quinoa AUR62022162 Ascc1: Activating signal cointegrator 1 complex subunit 1 C_Quinoa_Scaffold_4319 + View
Capsella rubella Carub.0003s1597 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) scaffold_3 + View
Cucumis sativus L. CsaV3_7G033510 activating signal cointegrator 1 complex subunit 1 chr7 + View
Daucus carota DCAR_007575 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv30464 GWHABJS00000019 + View
Durio zibethinus Duzib160G0428 NW_019168015.1 + View
Erigeron canadensis ECA247G1811 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.F03052 Chr06 + View
Erythranthe guttata Migut.I00929 scaffold_9 - View
Erythranthe guttata Migut.K00517 scaffold_11 - View
Eutrema salsugineum Thhalv10020736m.g K18666 - activating signal cointegrator complex subunit 1 (ASCC1) scaffold_13 - View
Fragaria x ananassa FAN05G1388 PF00013//PF10469 - KH domain (KH_1) // AKAP7 2'5' RNA ligase-like domain (AKAP7_NLS) Fvb6-3 - View
Fragaria x ananassa FAN02G4091 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) Fvb6-4 - View
Fragaria x ananassa FAN14G4842 PF00013//PF10469 - KH domain (KH_1) // AKAP7 2'5' RNA ligase-like domain (AKAP7_NLS) Fvb6-1 - View
Fragaria vesca FvH4_6g31960 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) Fvb6 + View
Gossypium hirsutum Gohir.A06G065400 PF00027//PF00069//PF00481//PF07714 - Cyclic nucleotide-binding domain (cNMP_binding) // Protein kinase domain (Pkinase) // Protein phosphatase 2C (PP2C) // Protein tyrosine kinase (Pkinase_Tyr) A06 + View
Gossypium hirsutum Gohir.D03G060300 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) D03 - View
Gossypium hirsutum Gohir.A02G119300 PF10469 - AKAP7 2'5' RNA ligase-like domain (AKAP7_NLS) A02 - View
Gossypium hirsutum Gohir.A09G081400 KOG2814 - Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) A09 - View
Glycine max Glyma.13G355900 PTHR13360//PTHR13360:SF1 - FAMILY NOT NAMED // ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 1 Gm13 + View
Glycine max Glyma.15G018200 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) Gm15 - View
Gossypium raimondii Gorai.003G064100 Chr03 - View
Helianthus annuus HanXRQChr04g0096261 Probable predicted eukaryotic LigT HanXRQChr04 + View
Lupinus albus Lalb_Chr22g0352601 2.7.11.12 - cGMP-dependent protein kinase / PKG II Lalb_Chr22 + View
Lotus japonicus Lj3g0013233 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) chr3 + View
Lonicera japonica Lj9A510G79 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_1_34781 Lsat_1_v8_lg_1 - View
Magnolia biondii MBI01_g06185_MAGBIO AED:0.18 Chr01 + View
Malus domestica MD17G1188900 Predicted eukaryotic LigT Chr17 - View
Malus domestica MD15G1192800 protein serine/threonine phosphatases Chr15 + View
Manihot esculenta Manes.11G036600 Chromosome11 - View
Manihot esculenta Manes.16G111900 Chromosome16 - View
Petunia axillaris Peaxi162Scf00015g00128 Eukaryotic LigT isoform 4 Peaxi162Scf00015 + View
Punica granatum PGR142G4412 NC_045128.1 + View
Punica granatum PGR102G2383 NC_045129.1 + View
Prunus persica Prupe.3G063900 Pp03 - View
Papaver somniferum PSO210G1626 NC_039359.1 + View
Populus trichocarpa Potri.001G186600 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) Chr01 + View
Phaseolus vulgaris Phvul.005G170400 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) Chr05 - View
Quercus lobata QL05p021219 5 - View
Rosa chinensis RcHm_v2.0_Chr2g0091381 RcHm_v2.0_Chr2 + View
Rosa chinensis RcHm_v2.0_Chr2g0139461 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim12G0201500 chr12 + View
Striga asiatica SGA_v2.0_scaffold5G02539 scaffold5 - View
Salix brachista Sabra01G0153700 GWHAAZH00000001 - View
Simmondsia chinensis Sc10g0007280 GWHAASQ00000010 - View
Solanum lycopersicum Solyc03g120480.3 Putative eukaryotic LigT (AHRD V3.3 *** AT3G16230.2) SL4.0ch03 - View
Schrenkiella parvula Sp3g14590 K18666 - activating signal cointegrator complex subunit 1 (ASCC1) ch3-1 + View
Solanum pennellii Sopen03g039360 Predicted eukaryotic LigT | FUNCTIONS IN: RNA binding, catalytic activity | INVOLVED IN: RNA metabolic process, regulation of transcription | LOCATED IN: mitochondrion | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup , K Homology , K Homology, type 1 , Predicted eukaryotic LigT , RNA ligase/cyclic nucleotide phosphodiesterase , Protein kinase A anchor protein, nuclear localisation signal domain | BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT . Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG401002551 Nucleic acid binding protein ST4.03ch03 - View
Selenicereus undatus Hund00659 Scaffold_33678 + View
Trochodendron aralioides TAR383G0250 group10 + View
Theobroma cacao Thecc.06G095300 Eukaryotic LigT Chromosome_6 + View
Tarenaya hassleriana THA.LOC104817973 uncharacterized protein LOC104817973 isoform X1 NW_010966021.1 - View
Trifolium pratense TPR.G37234 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI34G0335 NC_052235.1 - View
Tripterygium wilfordii TWI12G1071 NC_052243.1 + View
Vaccinium macrocarpon vmacro16977 Similar to Ascc1: Activating signal cointegrator 1 complex subunit 1 (Mus musculus OX%3D10090) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1080G1628 CM024079.1 - View
Vitis vinifera GSVIVG01017044001 chr9 - View