Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 4.4e-68 261.2 130 100.0
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 1.5e-47 193.0 112 88.4
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 1.5e-47 193.0 112 88.4
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 7.3e-47 190.7 112 86.6
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 2.1e-46 189.1 112 87.5
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.8e-46 188.7 112 84.8
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.8e-46 188.7 112 85.7
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 4.7e-46 188.0 110 86.4
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 4.7e-46 188.0 112 84.8
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.0e-45 186.8 112 85.7
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.8e-45 186.0 112 83.9
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.8e-45 186.0 112 83.9
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 3.1e-45 185.3 112 83.9
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 3.1e-45 185.3 112 83.9
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.1e-45 185.3 112 83.9
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 4.0e-45 184.9 112 83.9
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 6.8e-45 184.1 112 83.9
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 6.8e-45 184.1 112 82.1
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 6.8e-45 184.1 112 82.1
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 6.8e-45 184.1 112 83.0
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 8.9e-45 183.7 112 82.1
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 8.9e-45 183.7 112 83.0
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 8.9e-45 183.7 112 83.9
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.2e-44 183.3 112 83.0
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 1.2e-44 183.3 111 82.0
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.5e-44 183.0 112 82.1
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 2.0e-44 182.6 112 81.2
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.6e-44 182.2 112 81.2
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.6e-44 182.2 112 82.1
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 2.6e-44 182.2 112 82.1
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 2.6e-44 182.2 112 82.1
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.6e-44 182.2 112 82.1
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 3.4e-44 181.8 112 82.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.4e-44 181.8 112 82.1
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.4e-44 181.8 112 82.1
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.4e-44 181.4 112 79.5
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 5.8e-44 181.0 112 80.4
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 5.8e-44 181.0 112 82.1
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.8e-44 181.0 112 82.1
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 5.8e-44 181.0 112 80.4
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 5.8e-44 181.0 112 80.4
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 5.8e-44 181.0 112 80.4
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 7.5e-44 180.6 112 81.2
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 9.8e-44 180.3 112 80.4
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 9.8e-44 180.3 112 82.1
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 9.8e-44 180.3 112 81.2
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 9.8e-44 180.3 112 81.2
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 9.8e-44 180.3 112 82.1
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.3e-43 179.9 112 81.2
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.3e-43 179.9 112 80.4
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 1.3e-43 179.9 112 79.5
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 1.3e-43 179.9 112 79.5
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 1.3e-43 179.9 112 79.5
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 1.7e-43 179.5 112 80.4
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 2.9e-43 178.7 112 81.2
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 2.9e-43 178.7 112 81.2
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 3.7e-43 178.3 112 81.2
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 3.7e-43 178.3 112 79.5
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 3.7e-43 178.3 111 82.0
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 3.7e-43 178.3 112 79.5
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 4.9e-43 177.9 131 72.5
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 4.9e-43 177.9 112 79.5
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 4.9e-43 177.9 111 80.2
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 8.3e-43 177.2 110 78.2
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 8.3e-43 177.2 112 79.5
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 8.3e-43 177.2 112 79.5
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 8.3e-43 177.2 112 79.5
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 8.3e-43 177.2 112 79.5
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 8.3e-43 177.2 112 79.5
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 8.3e-43 177.2 112 79.5
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 8.3e-43 177.2 112 79.5
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 8.3e-43 177.2 112 80.4
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 8.3e-43 177.2 112 79.5
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 1.1e-42 176.8 112 78.6
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 1.1e-42 176.8 112 79.5
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.1e-42 176.8 112 78.6
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 1.4e-42 176.4 112 81.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.4e-42 176.4 112 80.4
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 1.9e-42 176.0 112 78.6
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.9e-42 176.0 112 78.6
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 2.4e-42 175.6 112 78.6
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 2.4e-42 175.6 112 77.7
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.4e-42 175.6 112 78.6
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 3.2e-42 175.3 112 78.6
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 4.1e-42 174.9 112 79.5
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 4.1e-42 174.9 112 78.6
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 4.1e-42 174.9 112 77.7
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 4.1e-42 174.9 112 77.7
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 5.4e-42 174.5 112 79.5
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 7.0e-42 174.1 109 80.7
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 9.2e-42 173.7 111 78.4
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 9.2e-42 173.7 112 78.6
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 9.2e-42 173.7 112 78.6
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 1.2e-41 173.3 112 79.5
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.2e-41 173.3 112 78.6
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.2e-41 173.3 112 78.6
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.6e-41 172.9 112 76.8
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.0e-41 172.6 110 80.0
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.0e-41 172.6 112 76.8
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.0e-41 172.6 112 78.6
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.0e-41 172.6 106 81.1
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.7e-41 172.2 111 76.6
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 3.5e-41 171.8 112 75.9
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 4.6e-41 171.4 112 77.7
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 2.3e-40 169.1 112 74.1
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 3.0e-40 168.7 112 75.9
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 5.0e-40 167.9 112 74.1
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 5.0e-40 167.9 112 74.1
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.5e-39 166.4 112 76.8
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.5e-39 165.6 119 73.9
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.4e-37 159.8 158 57.6
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 2.3e-37 159.1 100 77.0
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 8.9e-37 157.1 98 80.6
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 1.7e-35 152.9 111 66.7
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.9e-35 151.4 90 83.3
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 3.2e-34 148.7 111 65.8
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 9.2e-34 147.1 105 71.4
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-33 146.7 105 70.5
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 2.3e-32 142.5 107 63.6
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 9.5e-31 137.1 111 58.6
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 8.9e-29 130.6 79 83.5
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.2e-28 130.2 78 82.1
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.2e-28 130.2 112 62.5
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 6.4e-27 124.4 79 79.7
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 8.3e-27 124.0 112 63.4
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.7e-24 116.3 76 77.6
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.7e-24 116.3 73 83.6
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 3.6e-22 108.6 67 76.1
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 4.0e-21 105.1 113 52.2
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 7.6e-20 100.9 78 70.5
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 8.4e-19 97.4 86 58.1
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 8.1e-14 80.9 102 40.2
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 8.1e-14 80.9 50 78.0
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 7.6e-12 74.3 90 51.1
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.9e-08 62.0 38 71.1
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.9e-08 62.0 42 64.3
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.1e-06 56.2 36 72.2


User provided reference genes

Program Settings