Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 3.5e-286 987.6 511 100.0
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 3.3e-159 565.8 510 65.3
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 9.8e-156 554.3 501 66.5
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 2.5e-151 539.7 491 65.0
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 2.1e-118 430.3 509 48.5
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 2.4e-117 426.8 511 49.3
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 9.9e-116 421.4 509 49.5
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 1.3e-115 421.0 509 49.5
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 1.9e-114 417.2 514 47.7
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 1.9e-103 380.6 526 45.6
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 3.1e-101 373.2 509 44.6
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 1.5e-100 370.9 519 43.9
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 2.6e-100 370.2 509 44.6
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 5.0e-99 365.9 392 51.8
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 6.5e-99 365.5 530 43.2
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 1.4e-98 364.4 509 43.8
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 2.5e-98 363.6 513 44.1
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 1.6e-97 360.9 520 43.1
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 2.7e-97 360.1 508 44.5
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 3.6e-97 359.8 519 44.3
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 7.9e-97 358.6 516 42.6
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 7.9e-97 358.6 557 41.5
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 5.1e-96 355.9 520 42.7
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 7.4e-95 352.1 509 44.0
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 7.4e-95 352.1 522 42.9
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 1.7e-94 350.9 523 43.8
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 6.3e-94 349.0 524 43.1
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 8.2e-94 348.6 508 41.7
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 4.5e-92 342.8 503 42.9
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 3.8e-91 339.7 511 41.9
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 1.9e-90 337.4 515 41.6
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 4.2e-90 336.3 523 41.1
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 5.5e-90 335.9 525 40.8
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 2.1e-89 334.0 513 42.5
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 4.7e-89 332.8 530 39.6
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 1.0e-88 331.6 508 42.5
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 3.9e-88 329.7 558 40.1
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 1.7e-86 324.3 508 39.0
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 1.7e-86 324.3 408 47.1
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 9.1e-85 318.5 508 41.1
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 2.6e-84 317.0 516 40.1
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 7.7e-84 315.5 486 40.7
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 5.0e-83 312.8 521 40.3
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 1.9e-82 310.8 390 45.9
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 2.5e-82 310.5 513 39.8
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 4.2e-82 309.7 519 40.5
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 5.5e-82 309.3 509 39.9
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 1.2e-81 308.1 523 38.8
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 1.6e-81 307.8 497 39.0
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 6.1e-81 305.8 580 38.1
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 1.8e-80 304.3 489 40.3
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 2.6e-79 300.4 525 38.3
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 4.4e-79 299.7 512 39.8
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 7.4e-79 298.9 518 37.1
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 7.4e-79 298.9 509 37.9
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 3.7e-78 296.6 523 37.7
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 4.8e-78 296.2 523 37.7
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 8.2e-78 295.4 484 40.3
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 8.2e-78 295.4 428 43.0
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 4.1e-77 293.1 386 45.9
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 1.2e-76 291.6 511 37.8
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 2.2e-75 287.3 513 38.8
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 2.2e-75 287.3 500 38.4
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 2.9e-75 287.0 511 42.1
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 1.5e-74 284.6 478 39.7
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 4.2e-74 283.1 577 35.7
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 4.2e-74 283.1 570 35.1
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 2.1e-73 280.8 563 35.5
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 2.7e-73 280.4 278 50.7
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 3.6e-73 280.0 495 38.0
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 1.5e-71 274.6 506 37.5
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 3.3e-71 273.5 491 37.3
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 4.4e-71 273.1 461 39.3
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 1.8e-69 267.7 483 38.7
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 1.8e-69 267.7 501 37.1
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 7.0e-69 265.8 512 36.5
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 7.0e-69 265.8 269 52.8
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 1.3e-67 261.5 382 42.9
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 2.2e-67 260.8 387 40.8
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 2.2e-67 260.8 387 40.8
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 1.2e-65 255.0 535 34.0
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 6.1e-65 252.7 500 35.8
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 4.0e-64 250.0 261 51.0
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 2.8e-62 243.8 512 34.2
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 3.7e-62 243.4 514 34.4
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 8.6e-59 232.3 374 39.6
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 5.5e-58 229.6 269 48.0
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 4.9e-54 216.5 344 42.4
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 4.3e-50 203.4 338 39.9
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 4.0e-48 196.8 278 40.6
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 2.6e-47 194.1 500 31.6
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 1.5e-42 178.3 561 28.9
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 9.5e-42 175.6 336 40.5
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 1.4e-40 171.8 209 47.8
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 9.8e-39 165.6 185 49.7
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 1.3e-38 165.2 301 35.9
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 8.3e-38 162.5 279 35.5
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.4e-37 161.8 290 38.3
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 5.6e-34 149.8 355 31.8
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 3.7e-30 137.1 106 63.2
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 1.5e-26 125.2 149 48.3
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 9.9e-23 112.5 101 58.4
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 1.7e-22 111.7 396 25.3
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.3e-19 101.3 113 48.7
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 1.5e-18 98.6 236 33.5
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.0e-15 88.2 59 71.2
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 1.6e-12 78.6 64 59.4
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 1.3e-11 75.5 72 51.4
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.4e-08 65.5 117 35.9
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.8e-08 65.1 117 35.9
CSS0004033 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.4e-08 64.7 47 66.0
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 3.1e-08 64.3 117 35.9
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 5.3e-08 63.5 131 32.1
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.5e-07 62.0 132 34.8
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.5e-07 62.0 132 34.8
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 5.8e-07 60.1 120 33.3
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 7.6e-07 59.7 127 33.1
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 1.3e-06 58.9 125 31.2
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 1.3e-06 58.9 119 36.1
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 2.2e-06 58.2 132 30.3
Aa31LG10G6030 Aethionema arabicum HOM05D005384 ORTHO05D006477 2.9e-06 57.8 123 35.0
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 2.9e-06 57.8 125 36.8
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 2.9e-06 57.8 131 32.1
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 2.9e-06 57.8 98 38.8
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 3.8e-06 57.4 123 32.5
Lj3C397G6 Lonicera japonica HOM05D005384 ORTHO05D006477 3.8e-06 57.4 135 34.1
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 4.9e-06 57.0 128 35.9
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 6.4e-06 56.6 109 34.9
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 6.4e-06 56.6 119 32.8
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 6.4e-06 56.6 125 36.0
Aqoxy3G02532 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 8.4e-06 56.2 131 31.3
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 8.4e-06 56.2 121 33.9
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 8.4e-06 56.2 119 31.9
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 8.4e-06 56.2 126 31.7


User provided reference genes

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