Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 2624.7 1324 100.0
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 2317.7 1328 88.0
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 2280.8 1330 87.3
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 2258.0 1332 86.3
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1668.3 1339 65.3
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1660.2 1335 64.7
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1636.3 1334 63.9
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1601.6 1336 63.4
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1594.7 1324 62.3
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1592.0 1338 61.5
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1587.0 1342 61.3
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1577.0 1340 61.3
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1567.4 1329 62.9
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1565.1 1326 61.4
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1563.1 1336 61.5
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1555.0 1335 61.5
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1553.9 1332 60.8
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1552.3 1311 62.1
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1552.3 1336 61.0
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1551.6 1336 60.8
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1548.5 1336 60.9
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1537.3 1336 60.5
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1534.6 1336 60.0
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1532.7 1338 60.9
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1532.3 1409 57.2
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1529.6 1351 60.1
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1529.2 1333 60.4
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1527.3 1333 59.7
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1518.4 1342 59.2
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1518.1 1336 59.1
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1515.7 1340 58.5
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1515.0 1335 58.8
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1515.0 1333 59.8
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1510.7 1342 59.0
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1509.2 1334 60.4
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1507.7 1333 59.2
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1506.1 1333 58.9
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1503.4 1273 61.0
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1501.1 1317 60.4
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1498.4 1337 59.6
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1498.0 1336 58.9
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1496.5 1376 57.8
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1481.8 1465 54.7
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1474.1 1327 58.2
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1473.0 1322 58.2
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1469.5 1261 60.4
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1464.9 1324 58.2
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1458.7 1329 57.7
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1458.0 1341 58.2
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1456.4 1322 59.3
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1454.5 1324 56.9
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1452.2 1211 62.0
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1452.2 1211 62.1
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1451.4 1336 57.4
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1448.3 1344 57.3
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1448.3 1325 58.1
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1444.5 1321 57.0
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1439.5 1341 56.7
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1439.5 1330 57.1
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1438.3 1316 57.4
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1436.0 1327 58.2
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1435.6 1329 57.6
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1434.5 1342 56.2
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1425.2 1351 56.6
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1421.8 1333 56.8
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1417.5 1337 56.5
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1409.0 1331 56.1
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1401.7 1340 55.8
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1400.6 1314 56.8
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1393.3 1347 55.8
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1389.8 1317 57.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1389.4 1319 56.9
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1385.5 1340 55.4
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1374.8 1332 56.1
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1361.3 1342 55.5
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1355.5 1333 54.8
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1345.9 1331 55.6
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1343.9 1319 55.8
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1342.4 1315 56.3
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1341.6 1315 56.0
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1336.6 1319 55.6
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1336.6 1319 55.6
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1335.9 1316 55.3
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1313.1 1318 53.9
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1312.0 1312 54.0
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1307.7 1250 55.0
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1243.4 1332 50.2
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1205.3 1057 60.5
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1194.1 1320 50.7
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1176.4 1339 49.0
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1172.5 1319 49.6
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1152.5 1338 48.1
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1143.6 972 62.0
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1132.1 1338 46.8
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1098.6 906 61.7
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1087.0 990 58.2
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1080.9 1226 49.9
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 4.2e-283 978.8 848 59.8
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 9.7e-272 941.0 1305 45.4
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 1.5e-256 890.6 1346 40.0
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 8.8e-241 838.2 1291 39.2
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 3.4e-224 783.1 1315 38.3
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 1.4e-222 777.7 1323 37.2
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 3.6e-218 763.1 1137 39.7
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 3.7e-207 726.5 951 44.1
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 2.5e-155 554.3 585 54.2
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 9.7e-147 525.8 484 58.1
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.2e-144 518.8 595 47.6
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 3.1e-113 414.5 1153 28.4
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 2.2e-98 365.2 291 62.2
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.3e-90 339.3 326 57.4
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.0e-87 329.7 1089 27.8
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 5.2e-84 317.4 345 51.9
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 4.4e-83 314.3 327 52.6
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 3.1e-76 291.6 261 62.1
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 6.4e-58 230.7 217 53.0
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.5e-54 218.8 208 56.2
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 4.3e-54 218.0 315 43.2
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.0e-47 195.3 188 55.3
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 1.3e-45 189.9 306 41.8
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.2e-41 175.3 152 59.9
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 8.2e-37 160.6 119 68.1
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 3.7e-29 135.2 671 24.9
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 4.5e-27 128.3 133 54.9
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 1.1e-22 113.6 122 50.0
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 6.5e-18 97.8 99 48.5
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.5e-11 75.5 65 63.1
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 1.7e-10 73.2 71 59.2
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 5.5e-09 68.2 104 41.3
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 2.1e-08 66.2 138 35.5


User provided reference genes

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