Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 2.4e-184 648.7 318 100.0
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.2e-164 583.2 319 89.3
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 3.7e-161 571.6 317 86.4
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 8.0e-132 474.2 269 85.1
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 1.1e-123 447.2 314 71.3
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 5.2e-123 444.9 318 70.8
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.2e-122 443.7 322 73.6
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 2.0e-122 443.0 314 71.3
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 3.4e-122 442.2 317 72.6
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 7.5e-122 441.0 317 72.2
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.2e-121 439.5 328 68.3
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 2.9e-121 439.1 280 75.4
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.9e-120 436.4 314 68.5
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.9e-120 436.4 314 68.5
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.9e-120 436.4 323 72.4
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 4.1e-120 435.3 333 66.4
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 7.1e-120 434.5 309 70.2
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 1.6e-119 433.3 322 70.5
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 6.0e-119 431.4 309 69.9
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 7.8e-119 431.0 335 66.3
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.0e-118 430.6 337 65.3
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.3e-118 430.3 314 71.0
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 2.3e-118 429.5 322 66.8
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 2.3e-118 429.5 312 69.9
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.3e-118 429.5 333 66.1
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 2.3e-118 429.5 333 66.1
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 3.9e-118 428.7 284 73.9
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 3.9e-118 428.7 353 64.3
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 3.9e-118 428.7 317 70.0
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 3.9e-118 428.7 323 69.0
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 5.1e-118 428.3 321 68.2
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 6.6e-118 427.9 314 67.5
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 6.6e-118 427.9 314 69.1
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 1.1e-117 427.2 319 69.0
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.5e-117 426.8 319 69.0
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.9e-117 426.4 311 69.1
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 7.3e-117 424.5 327 66.7
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 9.5e-117 424.1 323 66.6
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 9.5e-117 424.1 320 69.1
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 2.1e-116 422.9 357 61.9
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 2.8e-116 422.5 311 68.8
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 1.8e-115 419.9 317 65.6
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 4.0e-115 418.7 334 63.8
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 8.9e-115 417.5 279 73.1
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 2.6e-114 416.0 274 74.5
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 3.4e-114 415.6 297 69.7
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 9.9e-114 414.1 295 68.5
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.3e-113 413.7 321 66.7
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 1.3e-113 413.7 339 64.6
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.9e-113 412.5 317 66.6
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 1.4e-112 410.2 351 61.0
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 7.1e-112 407.9 274 71.2
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 7.1e-112 407.9 274 70.8
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.2e-111 407.1 335 61.8
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.6e-111 406.8 291 70.4
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.7e-111 406.0 309 68.3
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.7e-110 403.3 326 63.5
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 5.1e-110 401.7 268 72.0
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 6.6e-110 401.4 323 64.1
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 4.3e-109 398.7 292 69.9
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 7.3e-109 397.9 287 71.4
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 7.3e-109 397.9 324 62.7
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 7.3e-109 397.9 319 62.7
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 9.6e-109 397.5 310 67.4
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 3.6e-108 395.6 338 62.4
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 3.6e-108 395.6 325 63.7
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.4e-107 393.7 307 66.8
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.8e-107 393.3 329 62.6
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 5.2e-107 391.7 327 61.8
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 5.2e-107 391.7 327 61.8
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 5.2e-107 391.7 327 61.8
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 6.9e-107 391.3 246 74.0
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 1.2e-106 390.6 333 62.5
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 7.6e-106 387.9 330 62.4
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 9.9e-106 387.5 328 60.7
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.3e-105 387.1 328 61.9
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.3e-105 387.1 356 59.6
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.3e-105 387.1 322 63.0
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 4.9e-105 385.2 330 60.9
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 2.4e-104 382.9 327 61.5
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 2.4e-104 382.9 327 61.5
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 2.4e-104 382.9 327 61.5
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 2.4e-104 382.9 311 61.4
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 3.2e-104 382.5 336 59.5
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 1.2e-103 380.6 321 60.7
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 2.1e-103 379.8 276 68.8
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 2.7e-103 379.4 331 60.7
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 4.6e-103 378.6 292 66.4
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 1.3e-102 377.1 295 65.8
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 1.7e-102 376.7 339 59.0
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 3.0e-102 375.9 338 58.9
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 6.6e-102 374.8 278 64.4
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 8.7e-102 374.4 300 66.0
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 8.7e-102 374.4 309 63.8
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 9.0e-99 364.4 268 64.6
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 2.0e-98 363.2 324 60.8
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 7.6e-98 361.3 270 65.2
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.2e-97 359.8 268 64.2
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 4.2e-96 355.5 278 61.5
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 5.4e-96 355.1 210 81.0
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.3e-94 350.5 285 63.9
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.9e-93 346.7 208 78.4
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 2.5e-93 346.3 208 77.9
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 4.3e-93 345.5 327 58.4
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 7.4e-93 344.7 265 60.8
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 1.4e-91 340.5 363 52.1
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 3.4e-90 335.9 264 63.6
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 2.9e-89 332.8 229 72.5
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 8.4e-89 331.3 255 62.0
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 5.3e-83 312.0 311 55.9
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 4.5e-82 308.9 227 62.1
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.6e-79 300.4 238 59.7
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.8e-78 297.0 226 62.4
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.9e-77 293.5 238 59.2
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 1.1e-64 251.1 179 67.0
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 9.4e-64 248.1 216 56.9
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 2.1e-63 246.9 166 72.3
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 7.9e-63 245.0 186 61.3
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 7.9e-63 245.0 211 62.1
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 1.1e-61 241.1 225 57.3
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 4.2e-56 222.6 279 46.2
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 4.2e-56 222.6 184 58.7
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 3.9e-54 216.1 232 52.6
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 2.7e-47 193.4 175 57.7
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 1.1e-43 181.4 109 78.9
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 1.3e-41 174.5 224 47.3
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 4.2e-40 169.5 191 48.2
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 9.4e-40 168.3 100 79.0
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-39 167.5 188 49.5
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.7e-39 166.0 188 48.9
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-37 161.0 221 42.1
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 9.8e-37 158.3 85 87.1
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 5.9e-34 149.1 102 74.5
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.6e-33 145.6 175 45.1
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.5e-32 144.4 191 43.5
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 1.2e-31 141.4 97 73.2
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 4.0e-30 136.3 77 83.1
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 2.6e-29 133.7 165 49.1
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.4e-29 132.9 191 39.8
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 4.5e-26 122.9 83 68.7
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 4.5e-26 122.9 241 34.4
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.9e-26 122.5 192 37.0
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.9e-25 119.8 188 39.9
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-24 118.2 175 39.4
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 7.3e-24 115.5 142 47.2
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-20 104.4 221 30.8
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 3.9e-17 93.2 180 33.9
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 1.4e-14 84.7 188 34.0
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 5.4e-11 72.8 56 60.7
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 9.5e-08 62.0 32 81.2
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 2.1e-07 60.8 68 48.5
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.8e-07 60.5 94 36.2


User provided reference genes

Program Settings