Gene: Pp3c16_6060
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c16_6060
- Transcript Identifier Pp3c16_6060V3.1
- Gene Type Coding gene
- Location Chr16 : 3958048-3960932 : negative
Gene Family Information
- ID HOM05D004663
- #Genes/#Species 156/95
- Phylogenetic origin
- ID ORTHO05D012250
- #Genes/#Species 24/1
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c16_6060V3.1
- pacid 32983884
- uniprot A0A2K1J7D9
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006284 | IEA | GOA Database | base-excision repair | |
| GO:0006284 | IEA | InterPro | base-excision repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006366 | IEA | GOA Database | transcription by RNA polymerase II |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0001055 | IBA | GOA Database | RNA polymerase II activity | |
| GO:0003899 | IBA IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0004844 | IEA | GOA Database | uracil DNA N-glycosylase activity | |
| GO:0004844 | IEA | InterPro | uracil DNA N-glycosylase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005665 | IBA | GOA Database | RNA polymerase II, core complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036895 | Uracil-DNA glycosylase-like domain superfamily |
| IPR005122 | Uracil-DNA glycosylase-like |
| IPR006592 | RNA polymerase, N-terminal |
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
| IPR002043 | Uracil-DNA glycosylase family 1 |
| Mapman id | Description |
|---|---|
| 14.5.9 | DNA damage response.base excision repair (BER).uracil repair DNA glycosylase (UNG) |