Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 0.0e+00 1589.3 808 100.0
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 0.0e+00 1206.4 746 82.7
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 0.0e+00 1174.1 719 82.5
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 0.0e+00 1169.5 719 82.3
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.4e-225 786.9 717 57.7
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 2.7e-224 782.7 742 55.9
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 1.2e-221 773.9 711 57.0
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 1.2e-219 767.3 726 55.2
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 7.6e-219 764.6 741 55.1
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 8.4e-218 761.1 726 56.5
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 3.5e-216 755.7 726 55.6
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.3e-215 753.1 718 54.7
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.1e-214 750.7 721 54.1
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 2.4e-212 743.0 740 53.4
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.9e-212 741.5 759 52.6
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.6e-211 739.6 741 53.3
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 3.4e-211 739.2 718 53.8
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 4.4e-211 738.8 724 53.0
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.4e-209 733.8 726 53.7
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.9e-209 733.4 726 53.7
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 7.1e-209 731.5 712 55.3
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 7.3e-206 721.5 725 52.4
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 7.3e-206 721.5 723 52.8
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 3.6e-205 719.2 734 53.4
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 3.6e-205 719.2 734 53.4
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 1.4e-204 717.2 725 53.8
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.4e-204 717.2 718 53.6
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.8e-204 716.8 730 52.9
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.5e-203 713.8 731 53.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 6.4e-202 708.4 725 52.0
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 8.4e-202 708.0 706 53.4
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 1.2e-200 704.1 730 52.7
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.8e-197 693.0 779 49.7
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.2e-193 679.5 715 51.0
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.0e-191 674.5 712 50.7
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 6.7e-191 671.8 716 50.3
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 8.7e-191 671.4 725 51.3
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.9e-190 670.2 717 48.4
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.6e-189 667.2 717 48.3
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.6e-189 667.2 724 50.3
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.1e-189 666.8 710 50.4
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 8.2e-189 664.8 740 50.1
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.4e-188 664.1 727 49.9
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 3.4e-187 659.4 725 49.4
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 5.9e-187 658.7 725 49.4
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 2.2e-186 656.8 715 49.8
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 2.9e-186 656.4 725 49.4
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 2.5e-185 653.3 712 49.7
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 3.2e-185 652.9 711 49.6
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 3.2e-185 652.9 719 49.8
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 7.9e-184 648.3 720 50.3
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 8.7e-183 644.8 715 49.7
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 5.7e-182 642.1 714 49.7
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 2.2e-181 640.2 712 49.7
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 2.2e-181 640.2 715 48.5
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 2.8e-181 639.8 712 50.0
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.1e-180 637.9 720 47.9
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 7.7e-179 631.7 732 48.2
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.3e-178 630.9 732 48.5
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 2.2e-178 630.2 711 48.9
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.9e-177 627.1 718 48.2
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 1.9e-177 627.1 726 49.7
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 2.5e-177 626.7 712 47.8
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 2.7e-176 623.2 728 47.8
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 4.3e-174 615.9 725 47.4
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.1e-172 611.3 753 46.1
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.2e-171 607.8 639 50.9
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.5e-171 607.4 719 48.3
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.0e-171 607.1 646 50.9
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 5.9e-171 605.5 719 48.0
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 7.7e-171 605.1 678 49.3
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 2.2e-170 603.6 736 46.6
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.0e-167 594.7 667 48.0
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.1e-164 584.7 724 46.4
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 3.1e-164 583.2 721 45.6
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 5.3e-156 555.8 722 44.2
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 2.0e-155 553.9 708 45.5
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.7e-152 543.5 793 42.4
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 6.1e-152 542.3 660 45.2
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-150 538.1 672 46.1
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 9.8e-150 535.0 664 45.3
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-149 534.6 665 46.5
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 2.8e-149 533.5 715 41.8
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 8.3e-149 531.9 665 46.3
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 4.5e-147 526.2 732 41.3
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.7e-146 524.2 753 41.3
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 1.1e-145 521.5 601 48.3
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 2.5e-145 520.4 748 41.4
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 6.1e-144 515.8 756 41.1
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 8.0e-144 515.4 773 40.2
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 5.2e-143 512.7 727 42.6
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 7.5e-142 508.8 655 44.3
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.8e-141 506.9 752 41.4
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 4.9e-141 506.1 719 42.4
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 6.3e-141 505.8 747 41.0
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 2.0e-139 500.7 750 40.9
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.3e-135 487.3 589 46.5
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 5.7e-134 482.6 729 40.2
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 4.1e-132 476.5 725 40.0
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 3.9e-130 469.9 755 38.7
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 3.6e-128 463.4 742 39.6
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 3.6e-128 463.4 755 38.8
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 5.2e-127 459.5 700 39.7
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 6.8e-127 459.1 725 39.4
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 8.9e-127 458.8 756 38.8
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.5e-126 458.0 762 38.5
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.6e-126 457.2 756 38.6
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 3.7e-125 453.4 760 38.9
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 6.4e-125 452.6 699 39.5
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.9e-124 451.1 533 47.7
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 2.5e-121 440.7 704 38.6
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 5.4e-116 422.9 633 42.5
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 7.1e-116 422.5 613 40.5
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 7.6e-110 402.5 812 35.5
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 1.6e-104 384.8 356 55.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.8e-96 357.5 374 53.5
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.8e-96 356.7 374 53.5
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 3.0e-90 337.4 367 51.5
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 7.1e-84 316.2 566 37.3
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 8.2e-72 276.2 545 35.8
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 2.7e-67 261.2 782 29.0
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 1.9e-65 255.0 726 29.9
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 2.5e-65 254.6 356 42.1
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 7.4e-65 253.1 352 39.8
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.6e-64 251.9 263 49.0
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 8.2e-64 249.6 630 31.1
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.9e-61 241.1 221 54.8
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 1.6e-59 235.3 621 29.8
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 2.3e-58 231.5 711 27.7
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 1.1e-49 202.6 204 49.5
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 3.3e-49 201.1 273 41.0
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.6e-46 192.2 337 37.1
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 3.8e-45 187.6 334 34.4
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-44 185.7 228 44.7
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 1.7e-40 172.2 305 36.7
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 1.2e-30 139.4 224 37.9
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.6e-30 139.0 833 23.2
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-30 138.7 425 28.9
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 3.4e-25 121.3 143 48.3
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 4.9e-24 117.5 81 66.7
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 6.3e-24 117.1 81 64.2
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 2.7e-22 111.7 228 34.6
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 5.6e-20 104.0 130 41.5
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 5.6e-20 104.0 154 38.3
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-19 102.8 154 37.7
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 4.9e-16 90.9 82 54.9
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.3e-13 82.8 105 43.8
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 4.7e-11 74.3 104 41.3
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 8.9e-10 70.1 54 63.0
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 1.2e-09 69.7 228 25.4
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 2.6e-09 68.6 99 40.4
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 2.6e-09 68.6 106 35.8
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 5.8e-09 67.4 82 45.1
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 5.8e-09 67.4 99 39.4
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 7.5e-09 67.0 82 45.1
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 7.5e-09 67.0 82 45.1
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 2.2e-08 65.5 82 43.9
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 1.9e-07 62.4 81 45.7
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 1.2e-06 59.7 106 34.0


User provided reference genes

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