Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 1.8e-271 938.7 496 100.0
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.4e-154 550.4 498 59.0
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 3.8e-144 515.8 497 57.1
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 9.3e-143 511.1 494 56.7
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.0e-141 507.7 488 54.7
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 5.1e-141 505.4 488 55.7
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 1.2e-137 494.2 493 53.8
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 6.0e-134 481.9 498 53.2
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 8.7e-133 478.0 501 54.3
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 1.5e-132 477.2 499 49.5
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.1e-130 471.1 482 55.6
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 1.2e-129 467.6 487 50.1
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 2.0e-129 466.8 488 49.4
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.7e-128 463.8 506 49.6
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 1.1e-127 461.1 491 48.5
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 1.9e-127 460.3 487 50.1
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 4.2e-127 459.1 494 48.6
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 5.5e-127 458.8 483 49.3
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 5.5e-127 458.8 510 48.8
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 1.2e-126 457.6 483 52.4
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.6e-126 457.2 479 51.1
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 3.5e-126 456.1 496 49.8
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 5.1e-125 452.2 489 55.0
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 6.7e-125 451.8 488 49.6
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 4.3e-124 449.1 489 47.2
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.6e-123 447.2 489 47.0
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 6.2e-123 445.3 491 50.7
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 8.2e-123 444.9 498 49.0
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 6.9e-122 441.8 540 45.4
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 6.9e-122 441.8 492 50.6
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 6.9e-122 441.8 498 49.0
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 9.0e-122 441.4 486 47.7
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 1.2e-121 441.0 488 48.0
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 3.4e-121 439.5 489 46.4
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 1.7e-120 437.2 548 45.3
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 4.9e-120 435.6 543 43.5
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 8.4e-120 434.9 493 50.3
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 4.2e-119 432.6 334 60.8
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.1e-118 430.3 480 48.3
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 7.9e-118 428.3 496 47.0
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 7.9e-118 428.3 485 49.7
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.4e-116 421.8 516 45.2
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 1.1e-114 417.9 492 45.3
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 1.5e-113 414.1 489 47.0
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 5.0e-112 409.1 495 46.5
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 1.1e-111 407.9 585 40.0
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 2.5e-111 406.8 487 44.4
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.2e-111 406.4 489 43.6
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 5.5e-111 405.6 414 50.7
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 5.5e-111 405.6 548 48.9
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 1.2e-110 404.4 344 58.4
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.6e-110 404.1 487 43.1
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 1.6e-110 404.1 480 45.0
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.1e-110 403.7 481 46.6
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 2.7e-110 403.3 488 43.0
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 4.6e-110 402.5 488 43.6
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 6.1e-110 402.1 488 43.4
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.8e-109 400.6 417 50.6
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 3.9e-109 399.4 490 44.3
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 5.1e-109 399.1 604 38.6
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 6.7e-109 398.7 510 44.5
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 8.7e-109 398.3 584 43.3
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.9e-108 397.1 493 45.6
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 2.5e-108 396.7 475 46.1
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.3e-108 396.4 586 42.0
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 5.7e-108 395.6 628 43.9
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.8e-107 393.3 486 47.1
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 4.8e-107 392.5 493 44.2
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 8.2e-107 391.7 486 44.9
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 4.1e-106 389.4 493 44.4
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 6.9e-106 388.7 493 44.2
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.2e-105 387.9 437 49.2
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 3.4e-105 386.3 482 47.1
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 4.5e-105 386.0 484 43.0
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 5.9e-105 385.6 498 43.4
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.3e-104 384.4 503 44.3
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.7e-104 384.0 484 43.2
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 2.2e-104 383.6 264 65.5
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 8.5e-104 381.7 498 43.6
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 8.5e-104 381.7 484 43.0
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 3.2e-103 379.8 496 41.1
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 2.1e-102 377.1 489 42.9
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 8.8e-101 371.7 242 67.8
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.4e-100 369.4 242 67.4
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.7e-99 367.5 488 41.8
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 2.2e-99 367.1 494 43.5
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 2.8e-99 366.7 516 41.1
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 4.8e-99 365.9 517 41.4
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 6.3e-99 365.5 264 62.1
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 1.8e-98 364.0 461 42.5
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 5.3e-98 362.5 255 63.1
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 6.9e-98 362.1 487 42.7
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 9.1e-98 361.7 331 55.3
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.6e-97 360.1 511 42.7
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 2.6e-97 360.1 498 42.8
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 3.8e-96 356.3 314 52.5
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 1.4e-95 354.4 487 40.2
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 6.1e-94 349.0 322 54.7
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 1.4e-93 347.8 469 41.8
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 1.5e-92 344.4 318 54.7
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 2.4e-90 337.0 254 62.2
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 4.1e-90 336.3 498 43.0
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 2.0e-89 334.0 316 53.5
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.1e-87 328.2 484 38.2
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 9.4e-87 325.1 433 42.5
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.1e-86 322.4 358 50.3
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.8e-85 320.9 386 48.7
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 1.5e-84 317.8 269 56.5
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.9e-79 300.8 485 38.4
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.2e-79 300.1 413 45.5
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.7e-76 289.3 405 43.5
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.8e-74 284.3 481 37.0
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 1.6e-73 281.2 587 33.7
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 3.8e-72 276.6 199 62.3
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 6.1e-70 269.2 503 34.2
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.0e-69 268.5 245 53.1
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 4.0e-69 266.5 486 37.7
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 2.0e-68 264.2 487 35.5
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.1e-66 258.5 257 51.0
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 1.8e-66 257.7 456 37.7
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.8e-66 257.7 439 37.8
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 4.1e-66 256.5 373 41.3
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 2.7e-65 253.8 382 38.7
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 3.4e-60 236.9 389 36.8
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.3e-56 224.2 183 56.8
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 5.8e-52 209.5 316 42.7
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 8.9e-45 185.7 133 62.4
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.7e-43 181.4 220 45.9
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.1e-39 168.7 184 44.0
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 5.8e-36 156.4 441 30.4
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 4.3e-31 140.2 121 55.4
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 4.0e-29 133.7 272 34.9
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 2.2e-27 127.9 147 45.6
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 6.6e-24 116.3 238 47.1
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 8.7e-24 115.9 242 40.1
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 4.0e-21 107.1 91 53.8
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 9.0e-21 105.9 159 40.3
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 7.6e-20 102.8 236 35.6
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.4e-18 98.6 114 37.7
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 2.7e-17 94.4 64 60.9
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 6.7e-16 89.7 64 54.7
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 8.7e-16 89.4 94 54.3
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.1e-15 89.0 73 56.2
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 3.7e-14 84.0 74 47.3
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.7e-14 84.0 92 54.3
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.0e-13 80.5 78 57.7
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 1.0e-08 65.9 121 35.5
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.8e-08 65.1 198 32.3
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 8.7e-08 62.8 77 44.2


User provided reference genes

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