Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 0.0e+00 1136.3 582 100.0
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.3e-231 806.6 607 70.8
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.1e-231 805.8 590 72.2
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.5e-229 799.7 526 77.4
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 6.4e-228 794.3 599 69.9
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.9e-227 792.7 575 70.8
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 4.2e-227 791.6 570 71.9
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.7e-226 788.9 593 69.5
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.5e-226 788.5 507 77.9
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 3.5e-226 788.5 599 69.4
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.7e-225 786.2 571 72.2
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.7e-225 786.2 571 72.2
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 3.0e-225 785.4 503 76.9
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.6e-225 784.3 504 77.8
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 9.6e-224 780.4 595 69.6
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.1e-223 779.2 592 70.4
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 4.8e-223 778.1 574 70.6
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 4.0e-222 775.0 584 69.3
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 5.3e-222 774.6 509 77.0
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.2e-221 773.5 507 76.7
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.6e-221 772.3 508 76.6
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 4.5e-221 771.5 598 67.6
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 5.8e-221 771.2 595 67.9
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 7.6e-221 770.8 605 68.6
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 2.2e-220 769.2 575 71.0
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 3.8e-220 768.5 521 73.1
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 6.4e-220 767.7 531 75.0
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.1e-219 766.9 508 75.2
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.4e-219 766.5 601 67.7
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.9e-219 766.1 530 73.2
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 4.2e-219 765.0 504 76.6
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 4.2e-219 765.0 592 68.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 7.1e-219 764.2 503 76.3
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.6e-218 763.1 603 68.2
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.6e-218 763.1 592 68.9
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.6e-218 763.1 601 67.7
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 2.1e-218 762.7 504 75.6
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.5e-218 761.9 605 66.9
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 2.3e-217 759.2 561 70.8
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.5e-216 756.5 629 65.3
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.3e-216 755.4 613 68.4
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 4.3e-216 755.0 515 75.7
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 3.7e-215 751.9 534 72.8
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.8e-215 751.5 605 64.5
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 4.8e-215 751.5 589 66.7
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.1e-214 750.4 594 67.0
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 6.9e-214 747.7 579 67.2
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.2e-213 746.9 503 73.4
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 2.0e-213 746.1 512 74.8
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 5.8e-213 744.6 552 70.8
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 7.6e-213 744.2 512 74.8
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.7e-212 743.0 552 70.7
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 6.5e-212 741.1 583 68.1
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.9e-211 739.6 566 67.7
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 7.1e-211 737.6 572 68.5
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 9.3e-211 737.3 578 68.0
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 1.2e-210 736.9 574 68.1
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.6e-210 736.5 583 66.9
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 2.1e-210 736.1 568 67.4
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 4.6e-210 734.9 579 66.0
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.0e-209 733.8 592 65.7
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.3e-209 733.4 544 68.0
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.8e-209 733.0 531 69.3
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.8e-209 733.0 600 65.0
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 1.8e-209 733.0 601 65.2
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 2.3e-209 732.6 599 64.9
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 2.3e-209 732.6 599 64.9
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 3.9e-209 731.9 591 64.5
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 3.9e-209 731.9 523 71.7
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 3.9e-209 731.9 558 67.7
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 3.3e-208 728.8 599 64.6
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 3.3e-208 728.8 592 64.5
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 4.3e-208 728.4 581 68.5
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 5.7e-208 728.0 602 64.6
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 7.4e-208 727.6 477 75.1
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 2.1e-207 726.1 502 71.5
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 6.3e-207 724.5 515 71.5
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.5e-205 719.9 556 67.4
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 3.4e-205 718.8 565 65.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 5.0e-204 714.9 514 72.2
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.2e-202 710.3 607 63.4
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.9e-202 707.6 459 78.0
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 2.5e-200 702.6 584 64.7
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.7e-199 698.7 460 76.3
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.1e-198 697.2 579 65.8
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.6e-197 692.6 533 69.0
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.7e-197 691.0 559 64.6
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.1e-195 687.2 646 60.5
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 5.5e-195 684.9 594 63.5
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.0e-193 680.6 503 69.0
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.5e-192 676.8 602 63.1
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.0e-192 676.4 589 62.8
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.2e-189 667.2 497 68.6
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 2.1e-186 656.4 558 62.7
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 2.1e-186 656.4 523 64.1
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.7e-186 656.0 496 66.3
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.1e-184 650.6 628 57.6
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 2.0e-181 639.8 476 67.2
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.8e-180 635.6 516 62.6
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 1.1e-179 634.0 584 61.0
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 7.5e-168 594.7 472 67.4
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 4.5e-165 585.5 367 78.7
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 3.8e-164 582.4 439 67.4
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.8e-161 573.5 555 57.8
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.3e-161 573.2 440 64.3
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.5e-155 553.9 523 57.4
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 1.8e-137 493.8 345 72.2
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.3e-137 493.4 441 57.4
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 3.2e-134 483.0 585 49.2
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.4e-129 467.6 485 52.2
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 7.6e-128 461.8 486 51.4
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.5e-125 453.0 465 55.1
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.5e-125 453.0 450 51.3
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.5e-123 447.6 308 72.1
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 6.2e-122 442.2 331 72.5
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 2.9e-119 433.3 504 51.6
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.1e-113 414.8 459 53.2
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.7e-111 407.5 266 77.4
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 9.6e-107 391.7 480 46.5
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.1e-92 342.8 282 61.0
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 9.7e-83 312.0 204 73.5
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.7e-75 286.2 231 64.5
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.0e-72 277.7 202 66.8
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 2.5e-70 270.8 173 75.7
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 5.7e-67 259.6 391 40.7
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.8e-66 257.3 262 50.4
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 4.1e-65 253.4 277 52.3
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 3.8e-63 246.9 178 67.4
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.6e-59 234.2 285 47.4
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 2.2e-58 231.1 224 57.6
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.8e-55 220.3 130 81.5
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.4e-54 215.7 207 55.6
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 7.7e-48 196.1 177 59.9
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 5.0e-47 193.4 113 82.3
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 6.5e-47 193.0 128 75.0
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.4e-41 173.3 136 64.7
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.0e-39 169.1 274 38.3
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 4.9e-34 150.2 122 60.7
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 2.7e-32 144.4 106 67.9
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 1.3e-31 142.1 269 36.4
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.4e-27 127.5 123 53.7
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.2e-26 124.8 95 67.4
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 6.0e-24 116.7 273 33.0
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 7.8e-24 116.3 112 53.6
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.3e-23 115.5 83 63.9
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.6e-21 108.6 232 37.1
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 3.1e-20 104.4 88 61.4
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 3.4e-19 100.9 56 91.1
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.4e-18 96.7 91 57.1
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.4e-17 94.7 91 56.0
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 7.1e-17 93.2 71 63.4
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.2e-16 92.4 251 30.7
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 2.7e-16 91.3 57 78.9
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.0e-15 89.4 71 60.6
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.5e-14 85.5 54 75.9
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 5.8e-11 73.6 137 33.6
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 6.4e-10 70.1 277 24.5
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 2.3e-07 61.6 59 49.2
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 3.9e-07 60.8 36 77.8
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.1e-07 60.5 40 77.5
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 7.3e-06 56.6 52 50.0


User provided reference genes

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