Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.3e-75 286.6 177 100.0
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 8.6e-67 257.3 164 98.8
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.4e-53 213.4 166 71.1
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 3.2e-53 212.2 166 75.9
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 3.2e-53 212.2 166 78.9
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 5.4e-53 211.5 164 82.3
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 7.1e-53 211.1 167 70.1
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 9.2e-53 210.7 165 77.6
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 4.6e-52 208.4 164 74.4
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 6.0e-52 208.0 164 73.2
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.3e-51 206.8 166 83.1
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.3e-51 206.8 164 76.8
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 3.9e-51 205.3 167 72.5
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.1e-50 203.8 165 69.1
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.5e-50 203.4 169 70.4
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 1.5e-50 203.4 169 70.4
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.9e-50 203.0 169 70.4
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.9e-50 203.0 169 70.4
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 1.9e-50 203.0 164 70.1
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 1.9e-50 203.0 167 70.1
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 2.5e-50 202.6 164 75.6
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 4.3e-50 201.8 167 67.1
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 4.3e-50 201.8 167 75.4
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 5.6e-50 201.4 165 75.8
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 7.3e-50 201.1 165 67.3
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.1e-49 199.5 169 69.2
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.1e-49 199.5 163 79.8
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.8e-49 199.1 167 70.7
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 3.6e-49 198.7 169 69.8
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 4.7e-49 198.4 165 74.5
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 6.2e-49 198.0 167 70.1
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 8.1e-49 197.6 165 70.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.4e-48 196.8 165 70.3
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.8e-48 196.4 164 68.9
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 1.8e-48 196.4 158 72.2
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 4.0e-48 195.3 164 64.6
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 6.8e-48 194.5 167 74.9
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 6.8e-48 194.5 167 68.9
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 8.9e-48 194.1 164 62.2
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.5e-47 193.4 162 69.8
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.5e-47 193.4 164 68.9
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 1.5e-47 193.4 164 75.0
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.6e-47 192.6 164 62.2
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 3.4e-47 192.2 167 68.9
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.4e-47 192.2 167 68.9
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.4e-47 192.2 167 68.9
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 4.4e-47 191.8 166 68.7
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 5.8e-47 191.4 168 72.0
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 7.6e-47 191.0 166 63.9
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.3e-46 190.3 164 75.0
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.7e-46 189.9 164 68.9
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.7e-46 189.9 168 66.7
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 2.2e-46 189.5 164 60.4
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 2.2e-46 189.5 167 65.3
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.9e-46 189.1 164 72.6
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.9e-46 189.1 167 76.0
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-46 189.1 168 70.2
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-46 189.1 168 70.2
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 2.9e-46 189.1 168 70.2
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 3.8e-46 188.7 164 65.2
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 4.9e-46 188.3 164 64.6
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 4.9e-46 188.3 164 62.8
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 8.4e-46 187.6 165 66.1
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.1e-45 187.2 164 64.6
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 2.4e-45 186.0 164 64.0
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 4.2e-45 185.3 168 60.1
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 4.2e-45 185.3 168 69.0
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 5.4e-45 184.9 166 68.7
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 7.1e-45 184.5 168 65.5
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 7.1e-45 184.5 167 61.7
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 9.3e-45 184.1 164 64.0
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 9.3e-45 184.1 164 67.7
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 9.3e-45 184.1 164 67.7
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.2e-44 183.7 168 65.5
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.2e-44 183.7 169 65.7
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.6e-44 183.3 169 70.4
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 2.7e-44 182.6 164 68.3
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.7e-44 182.6 168 60.7
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 3.5e-44 182.2 168 64.9
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.6e-44 181.8 158 64.6
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 6.0e-44 181.4 164 67.1
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.3e-43 180.3 168 65.5
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.3e-43 180.3 164 67.1
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 2.3e-43 179.5 164 62.8
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 2.3e-43 179.5 166 57.8
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 2.3e-43 179.5 164 68.9
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.0e-43 179.1 168 58.3
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.0e-43 179.1 170 60.6
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.9e-43 178.7 164 57.9
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 5.1e-43 178.3 164 69.5
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 6.6e-43 177.9 164 64.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.5e-42 176.8 164 57.3
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 5.6e-42 174.9 163 57.7
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 9.6e-42 174.1 169 59.2
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 2.8e-41 172.6 168 56.5
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 8.1e-41 171.0 145 62.8
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.4e-40 170.2 165 67.3
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.4e-40 170.2 172 65.1
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 1.8e-40 169.9 165 67.3
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 4.0e-40 168.7 169 55.6
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 5.3e-40 168.3 165 67.3
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 5.3e-40 168.3 164 65.2
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 9.0e-40 167.5 167 63.5
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.5e-39 166.8 167 62.9
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.5e-39 166.8 167 63.5
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.5e-39 166.8 164 63.4
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.6e-39 166.0 164 64.0
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 5.8e-39 164.9 167 64.1
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 5.8e-39 164.9 167 64.1
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 5.8e-39 164.9 167 64.1
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 7.6e-39 164.5 164 62.8
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.7e-38 163.3 168 60.1
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.7e-38 163.3 168 59.5
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 3.8e-38 162.2 172 64.0
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.1e-37 160.6 167 63.5
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.4e-37 160.2 167 60.5
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.0e-35 154.1 161 57.1
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.7e-35 153.3 164 52.4
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.3e-34 149.1 166 50.6
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 2.4e-32 142.9 165 60.0
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 9.9e-31 137.5 153 55.6
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 8.4e-30 134.4 183 53.0
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-29 134.0 164 50.0
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 4.6e-28 128.6 140 62.1
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.9e-28 127.9 101 94.1
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 9.6e-26 120.9 161 50.9
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.8e-24 116.7 163 50.3
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-23 114.0 142 56.3
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.9e-22 109.4 160 47.5
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.8e-22 109.0 164 42.7
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 8.7e-19 97.8 162 40.7
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.5e-18 97.1 116 62.1
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.8e-16 90.1 148 44.6
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 4.1e-16 89.0 54 83.3
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.5e-15 87.0 57 68.4
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.0e-15 86.7 115 53.9
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 2.1e-12 76.6 97 57.7
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 2.3e-11 73.2 55 72.7
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.1e-10 70.9 96 49.0
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.9e-10 70.1 109 52.3
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 3.3e-10 69.3 109 51.4
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 4.3e-10 68.9 50 70.0
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 9.7e-10 67.8 55 70.9
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 2.8e-09 66.2 163 33.1
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.8e-08 63.5 143 37.8
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.4e-08 63.2 53 58.5


User provided reference genes

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