Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.6e-150 536.2 302 100.0
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.8e-133 479.6 302 89.4
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 9.0e-133 477.2 304 87.2
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 2.6e-132 475.7 304 85.2
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 3.4e-132 475.3 304 82.2
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.4e-130 469.9 303 81.8
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.9e-130 469.5 307 82.4
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.9e-130 469.5 305 85.2
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.5e-130 469.2 303 85.5
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 2.5e-130 469.2 303 85.1
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 4.2e-130 468.4 305 83.0
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 4.2e-130 468.4 307 82.1
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.1e-130 467.6 307 82.4
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.1e-130 467.6 307 82.4
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.1e-129 466.1 301 87.7
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.7e-129 465.7 307 81.8
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 4.6e-129 464.9 302 84.8
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 6.1e-129 464.5 304 84.9
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 6.1e-129 464.5 305 80.3
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 7.9e-129 464.2 302 81.8
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 7.9e-129 464.2 302 82.8
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.3e-128 463.4 307 82.1
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 6.7e-128 461.1 296 83.4
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.1e-127 460.3 302 81.1
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 1.1e-127 460.3 305 81.6
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.9e-127 459.5 305 81.3
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 5.7e-127 458.0 303 78.9
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 5.7e-127 458.0 303 81.2
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 7.4e-127 457.6 302 84.8
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 9.7e-127 457.2 305 84.6
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.3e-126 456.8 303 81.2
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.6e-126 456.4 302 80.8
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 3.7e-126 455.3 302 77.2
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 3.7e-126 455.3 305 80.0
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.8e-125 453.0 306 82.4
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.4e-125 452.6 302 82.8
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.4e-125 452.6 302 80.5
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 2.4e-125 452.6 303 82.5
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.1e-125 452.2 300 81.0
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 4.1e-125 451.8 303 79.9
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 5.3e-125 451.4 302 76.2
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 5.3e-125 451.4 302 81.1
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 6.9e-125 451.1 305 84.9
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 6.9e-125 451.1 302 84.1
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 6.9e-125 451.1 302 78.8
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 9.0e-125 450.7 302 78.8
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.6e-124 449.1 302 78.8
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 2.6e-124 449.1 306 79.4
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.6e-124 449.1 305 77.7
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 1.0e-123 447.2 304 76.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.7e-123 446.4 296 79.4
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.7e-123 446.4 302 76.8
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.7e-123 446.4 304 80.6
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.7e-123 446.4 305 78.0
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.2e-123 446.0 302 77.8
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 2.9e-123 445.7 307 81.8
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 3.8e-123 445.3 307 78.8
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 6.5e-123 444.5 302 75.5
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 6.5e-123 444.5 302 77.5
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 6.5e-123 444.5 306 80.7
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 6.5e-123 444.5 306 80.7
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 6.5e-123 444.5 306 80.7
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 8.5e-123 444.1 305 76.1
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 8.5e-123 444.1 302 80.1
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 8.5e-123 444.1 302 80.1
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 4.2e-122 441.8 306 80.4
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 5.5e-122 441.4 306 75.2
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 7.2e-122 441.0 305 78.4
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 7.2e-122 441.0 302 76.5
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 9.4e-122 440.7 305 78.7
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.4e-122 440.7 305 78.7
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 9.4e-122 440.7 302 79.5
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 1.2e-121 440.3 302 77.2
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.2e-121 440.3 304 78.6
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.2e-121 440.3 302 79.8
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.6e-121 439.9 302 79.5
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.1e-121 439.5 306 77.8
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 3.6e-121 438.7 302 80.1
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 4.6e-121 438.3 306 77.8
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 6.1e-121 438.0 306 77.8
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 7.9e-121 437.6 304 74.0
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.0e-120 437.2 305 78.4
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.0e-120 437.2 302 78.1
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 3.9e-120 435.3 306 77.8
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 6.7e-120 434.5 306 74.2
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.1e-119 433.7 306 73.5
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.5e-119 433.3 302 80.1
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 4.8e-118 428.3 302 73.2
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 8.2e-118 427.6 306 73.2
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 8.2e-118 427.6 305 77.4
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 4.1e-117 425.2 283 77.7
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 3.4e-116 422.2 303 77.9
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 5.9e-116 421.4 303 78.2
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 7.7e-116 421.0 305 77.4
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.7e-115 419.9 302 76.8
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.7e-115 419.9 302 76.2
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 2.2e-115 419.5 303 77.9
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 6.5e-115 417.9 307 71.7
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 8.5e-115 417.5 299 75.3
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.4e-114 416.8 302 76.8
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 9.4e-114 414.1 305 74.4
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 9.4e-114 414.1 305 74.8
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 3.6e-113 412.1 305 75.1
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 3.6e-113 412.1 305 75.1
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 3.6e-113 412.1 305 75.1
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.0e-112 410.6 306 72.9
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 3.0e-112 409.1 306 72.2
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 3.3e-111 405.6 307 69.1
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.7e-110 403.3 303 75.9
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.7e-110 403.3 312 73.4
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 2.9e-107 392.5 301 69.1
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 5.0e-107 391.7 302 67.9
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.3e-101 371.7 280 74.6
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 8.5e-99 364.4 302 63.9
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.9e-98 363.2 252 85.7
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 2.7e-97 359.4 291 69.8
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 3.0e-96 355.9 305 68.2
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 9.1e-93 344.4 323 64.1
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 9.1e-93 344.4 305 59.7
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.6e-89 333.6 195 82.6
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 3.5e-84 315.8 298 60.7
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.0e-80 304.3 303 55.4
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 5.2e-80 302.0 193 80.8
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 5.7e-79 298.5 252 64.3
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 3.7e-78 295.8 303 59.7
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.1e-77 292.4 271 71.2
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.4e-69 266.5 301 51.5
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 3.9e-67 259.2 134 95.5
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 8.6e-67 258.1 164 98.8
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.0e-59 234.6 201 65.2
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 2.8e-57 226.5 204 68.6
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 2.0e-55 220.3 191 69.1
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.1e-48 198.0 303 43.6
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 8.9e-48 194.9 294 44.6
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 8.4e-46 188.3 233 53.2
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 6.0e-44 182.2 193 58.0
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.3e-42 176.0 195 56.9
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 8.1e-41 171.8 199 48.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.3e-38 164.5 111 77.5
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 4.9e-38 162.5 105 74.3
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 9.0e-32 141.7 164 49.4
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 9.9e-31 138.3 83 77.1
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 2.4e-29 133.7 218 45.0
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.4e-21 107.8 58 84.5
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 1.9e-21 107.5 61 80.3
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 9.3e-21 105.1 58 81.0
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 3.5e-20 103.2 154 47.4
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 6.7e-19 99.0 305 33.8
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.1e-18 98.2 305 33.4
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.5e-18 97.8 59 76.3
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.6e-17 94.4 116 61.2
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 1.7e-14 84.3 114 53.5
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 3.5e-12 76.6 97 57.7
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 6.7e-11 72.4 55 72.7
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 9.7e-10 68.6 96 47.9
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 3.1e-08 63.5 127 41.7


User provided reference genes

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