Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.3e-63 246.1 120 100.0
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 2.5e-62 241.9 120 98.3
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.2e-59 233.0 120 91.7
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 1.2e-59 233.0 120 92.5
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 2.6e-59 231.9 120 92.5
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 4.5e-59 231.1 120 91.7
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 4.5e-59 231.1 120 91.7
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 1.3e-58 229.6 120 90.8
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.3e-58 229.6 120 90.0
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.3e-58 229.6 120 90.0
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 2.9e-58 228.4 117 91.5
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 4.9e-58 227.6 120 88.3
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 4.9e-58 227.6 120 90.8
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 6.5e-58 227.3 120 91.7
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 6.5e-58 227.3 120 89.2
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 6.5e-58 227.3 120 90.8
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 8.4e-58 226.9 120 90.8
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 8.4e-58 226.9 118 89.8
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-57 226.5 120 88.3
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-57 226.5 120 88.3
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-57 226.5 120 88.3
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-57 226.5 120 88.3
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-57 226.5 120 88.3
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-57 226.5 120 88.3
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-57 226.5 120 88.3
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-57 226.5 120 88.3
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-57 226.5 120 88.3
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.4e-57 226.1 120 90.0
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 1.4e-57 226.1 120 90.0
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 1.9e-57 225.7 117 92.3
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 1.9e-57 225.7 120 88.3
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 2.5e-57 225.3 120 88.3
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 4.2e-57 224.6 120 90.0
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 5.5e-57 224.2 120 89.2
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 5.5e-57 224.2 120 88.3
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 9.3e-57 223.4 117 91.5
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 9.3e-57 223.4 120 88.3
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 9.3e-57 223.4 119 87.4
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.5e-56 221.5 120 88.3
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 3.5e-56 221.5 120 88.3
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.6e-56 221.1 117 91.5
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.6e-56 221.1 117 91.5
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.6e-56 221.1 117 91.5
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.1e-55 217.6 117 90.6
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.5e-54 215.3 117 89.7
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 3.3e-54 214.9 120 86.7
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 4.3e-54 214.5 120 85.0
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 1.3e-53 213.0 120 85.8
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 1.3e-53 213.0 120 85.8
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 1.3e-53 213.0 120 85.8
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.3e-53 213.0 120 85.8
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 1.3e-53 213.0 120 85.8
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 1.3e-53 213.0 120 85.8
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 1.6e-53 212.6 120 84.2
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 3.7e-53 211.5 120 85.0
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 4.8e-53 211.1 120 85.0
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 8.2e-53 210.3 120 85.0
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 8.2e-53 210.3 120 85.0
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 8.2e-53 210.3 120 85.0
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 8.2e-53 210.3 120 85.0
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 8.2e-53 210.3 120 85.0
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.1e-52 209.9 120 84.2
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 5.3e-52 207.6 119 84.0
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 9.0e-52 206.8 117 84.6
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 9.0e-52 206.8 120 81.7
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 4.5e-51 204.5 120 82.5
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 5.9e-51 204.1 120 82.5
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 1.2e-48 196.4 120 80.8
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 2.1e-48 195.7 119 79.0
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 4.6e-48 194.5 113 80.5
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 7.9e-48 193.7 120 76.7
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.4e-47 193.0 117 80.3
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.0e-46 189.1 112 78.6
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 2.2e-45 185.7 119 73.9
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 4.8e-45 184.5 115 75.7
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 4.8e-45 184.5 119 73.1
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.3e-45 184.1 98 88.8
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 8.2e-45 183.7 114 76.3
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 8.2e-45 183.7 98 87.8
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.1e-44 183.3 97 89.7
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.1e-44 183.3 97 89.7
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.8e-44 182.6 98 87.8
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.8e-44 182.6 96 89.6
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 6.9e-44 180.6 94 89.4
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.2e-43 179.9 98 88.8
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.2e-43 179.9 95 90.5
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.5e-43 179.5 113 75.2
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 5.9e-43 177.6 94 90.4
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 5.9e-43 177.6 97 87.6
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 1.3e-42 176.4 94 88.3
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.2e-42 175.6 95 88.4
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 2.2e-42 175.6 95 84.2
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 2.2e-42 175.6 95 84.2
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 2.2e-42 175.6 96 87.5
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 2.9e-42 175.3 97 83.5
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 2.9e-42 175.3 98 83.7
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.0e-42 174.5 109 78.9
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 1.1e-41 173.3 94 87.2
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 1.4e-41 172.9 94 89.4
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.4e-41 172.9 120 72.5
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.2e-41 171.4 96 84.4
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 2.7e-40 168.7 123 68.3
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.6e-40 168.3 92 84.8
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.7e-40 167.9 93 88.2
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 6.1e-40 167.5 90 84.4
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 7.9e-40 167.2 94 83.0
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 1.0e-39 166.8 103 74.8
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 3.9e-39 164.9 120 70.8
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.3e-38 161.8 89 87.6
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.7e-38 161.0 93 78.5
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 7.4e-38 160.6 117 69.2
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.3e-37 159.8 87 88.5
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 2.8e-37 158.7 126 63.5
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.1e-36 155.2 88 80.7
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 9.1e-36 153.7 117 70.1
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 2.0e-35 152.5 98 76.5
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.7e-35 150.6 86 83.7
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-34 150.2 89 80.9
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 1.4e-33 146.4 113 69.0
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.2e-33 144.8 77 85.7
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 1.6e-32 142.9 86 83.7
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 2.7e-32 142.1 76 86.8
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 2.3e-31 139.0 124 56.5
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-31 137.9 78 87.2
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-31 137.9 78 87.2
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-31 137.9 78 87.2
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-31 137.9 78 87.2
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-31 137.9 78 87.2
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.5e-30 136.3 85 77.6
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.5e-30 136.3 77 87.0
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.5e-30 136.3 77 87.0
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.5e-30 136.3 77 87.0
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.5e-30 136.3 77 87.0
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.5e-30 136.3 77 87.0
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 2.6e-30 135.6 117 53.0
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 7.4e-30 134.0 70 87.1
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 7.4e-30 134.0 125 54.4
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 2.2e-29 132.5 68 86.8
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.1e-28 130.2 66 90.9
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 2.0e-27 125.9 81 75.3
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 3.5e-27 125.2 96 67.7
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 1.0e-26 123.6 121 51.2
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.0e-26 121.3 118 56.8
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 6.1e-24 114.4 70 72.9
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.2e-22 110.2 64 85.9
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 1.5e-22 109.8 70 74.3
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-22 108.6 59 83.1
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 1.4e-20 103.2 61 83.6
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 2.4e-20 102.4 56 83.9
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 5.3e-20 101.3 74 64.9
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 7.0e-20 100.9 88 62.5
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 9.1e-20 100.5 110 52.7
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 2.0e-19 99.4 111 45.0
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 2.7e-19 99.0 62 80.6
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 3.5e-19 98.6 60 76.7
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 2.2e-18 95.9 62 72.6
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 3.8e-18 95.1 55 83.6
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.0e-18 94.7 53 86.8
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.0e-18 94.7 53 86.8
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 1.1e-17 93.6 61 78.7
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.5e-17 93.2 78 60.3
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 3.2e-17 92.0 64 73.4
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 2.1e-16 89.4 52 82.7
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.1e-16 89.4 41 95.1
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 6.1e-16 87.8 90 53.3
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 3.4e-14 82.0 47 80.9
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 3.4e-14 82.0 49 79.6
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 2.8e-13 79.0 70 65.7
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-12 77.0 41 80.5
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 1.8e-12 76.3 49 79.6
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 1.0e-10 70.5 33 93.9
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 1.7e-10 69.7 33 93.9
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.7e-10 69.7 33 93.9
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 2.3e-10 69.3 41 75.6
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.8e-10 68.6 37 78.4
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 3.8e-10 68.6 56 57.1
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.5e-09 66.6 49 65.3
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 7.2e-09 64.3 49 67.3
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 2.8e-08 62.4 36 88.9
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 1.8e-07 59.7 36 69.4
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 1.2e-06 57.0 34 73.5
FAN07G1499 Fragaria x ananassa HOM05D000806 ORTHO05D007429 2.6e-06 55.8 54 53.7


User provided reference genes

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