Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.0e-128 463.4 228 100.0
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 2.5e-58 229.6 223 54.7
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 3.7e-54 215.7 219 53.4
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.1e-53 214.2 223 53.4
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 1.1e-50 204.1 228 50.9
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.5e-42 177.2 211 47.9
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 5.2e-40 168.7 229 46.3
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 9.8e-39 164.5 216 42.6
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 2.4e-37 159.8 229 45.4
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 7.2e-34 148.3 149 51.0
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 2.8e-33 146.4 229 41.5
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 4.7e-33 145.6 220 43.6
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.0e-32 144.4 235 40.9
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 4.0e-32 142.5 219 42.5
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 5.2e-32 142.1 238 41.6
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 8.9e-32 141.4 210 43.3
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 2.6e-31 139.8 220 42.7
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 2.6e-31 139.8 228 42.5
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 7.5e-31 138.3 251 39.0
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 7.5e-31 138.3 150 50.0
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 9.8e-31 137.9 214 40.7
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.3e-30 137.5 225 39.6
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 1.7e-30 137.1 206 45.1
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.9e-30 136.3 217 43.3
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 6.3e-30 135.2 145 49.0
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 6.3e-30 135.2 221 41.2
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 8.3e-30 134.8 228 40.8
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.1e-29 134.4 262 38.2
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.4e-29 133.3 217 42.9
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 4.1e-29 132.5 166 46.4
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.0e-29 131.7 228 40.4
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.2e-28 131.0 214 41.1
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 1.6e-28 130.6 212 39.2
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 2.0e-28 130.2 221 39.8
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.0e-28 130.2 210 42.9
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.7e-28 129.8 210 40.5
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.7e-28 129.8 215 40.9
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.7e-28 129.8 220 41.4
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.3e-27 127.5 217 42.4
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.3e-27 127.5 217 39.2
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.7e-27 127.1 228 39.0
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 1.5e-26 124.0 197 42.6
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 1.9e-26 123.6 218 38.5
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 2.5e-26 123.2 167 44.3
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 5.6e-26 122.1 238 35.7
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 5.6e-26 122.1 179 39.1
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.8e-25 119.8 139 45.3
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 8.0e-25 118.2 221 38.9
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.4e-24 117.5 221 38.0
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 3.1e-24 116.3 124 52.4
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 4.0e-24 115.9 224 37.5
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 6.8e-24 115.2 222 36.9
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 6.8e-24 115.2 142 43.0
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 8.9e-24 114.8 131 50.4
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 2.6e-23 113.2 153 43.1
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 2.6e-23 113.2 153 43.1
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 2.6e-23 113.2 153 43.1
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 3.4e-23 112.8 214 36.0
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 4.4e-23 112.5 214 34.6
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 4.4e-23 112.5 214 34.6
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.4e-23 112.5 230 33.9
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 5.8e-23 112.1 170 40.6
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 7.5e-23 111.7 239 32.2
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 9.8e-23 111.3 215 35.8
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 9.8e-23 111.3 152 42.1
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.3e-22 110.9 141 39.7
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.3e-22 110.9 211 35.5
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 1.3e-22 110.9 283 33.9
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 1.7e-22 110.5 215 38.1
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 2.2e-22 110.2 144 40.3
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 2.2e-22 110.2 151 42.4
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 2.9e-22 109.8 216 37.5
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.9e-22 109.8 210 39.0
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.7e-22 109.4 230 33.5
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.1e-21 107.8 226 37.2
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-21 107.5 171 38.0
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.4e-21 107.5 167 36.5
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 1.4e-21 107.5 219 37.4
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 2.4e-21 106.7 223 35.9
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.4e-21 106.7 230 35.2
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 5.4e-21 105.5 145 47.6
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 5.4e-21 105.5 167 38.9
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 7.0e-21 105.1 175 38.9
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.2e-20 104.4 175 38.3
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 1.0e-19 101.3 155 38.7
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 1.0e-19 101.3 206 35.0
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.7e-19 100.5 239 33.9
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 3.0e-19 99.8 164 45.1
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 3.0e-19 99.8 246 34.1
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 3.9e-19 99.4 222 34.7
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 3.9e-19 99.4 219 34.7
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 5.0e-19 99.0 132 45.5
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 8.6e-19 98.2 220 35.0
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.1e-18 97.8 200 34.0
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 4.3e-18 95.9 119 45.4
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 4.3e-18 95.9 119 45.4
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 5.6e-18 95.5 114 43.9
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 5.6e-18 95.5 296 30.1
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.2e-17 94.4 169 36.7
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 1.6e-17 94.0 199 33.2
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 2.1e-17 93.6 203 35.0
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.6e-17 92.8 147 38.1
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 6.2e-17 92.0 119 44.5
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.1e-16 91.3 214 34.1
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 1.1e-16 91.3 225 32.9
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 1.8e-16 90.5 183 34.4
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 2.3e-16 90.1 170 34.1
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 4.0e-16 89.4 266 30.5
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 4.0e-16 89.4 183 36.6
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 5.2e-16 89.0 190 34.2
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 5.2e-16 89.0 190 34.2
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 8.9e-16 88.2 141 36.9
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 1.5e-15 87.4 190 33.7
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 4.4e-15 85.9 175 33.1
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 4.4e-15 85.9 145 33.8
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 9.8e-15 84.7 108 46.3
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 3.7e-14 82.8 180 37.8
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 1.9e-13 80.5 145 33.8
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 2.4e-13 80.1 147 34.7
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 3.2e-13 79.7 318 26.4
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 7.1e-13 78.6 145 39.3
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 9.2e-13 78.2 175 32.6
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 9.2e-13 78.2 131 39.7
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 6.0e-12 75.5 185 31.9
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 6.0e-12 75.5 117 40.2
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 6.0e-12 75.5 143 37.1
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 6.0e-12 75.5 77 49.4
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 7.8e-12 75.1 167 35.3
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 1.3e-11 74.3 119 38.7
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 3.9e-11 72.8 129 40.3
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 6.6e-11 72.0 166 34.9
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 2.5e-10 70.1 138 37.0
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 4.3e-10 69.3 81 44.4
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 7.3e-10 68.6 81 51.9
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 9.5e-10 68.2 95 44.2
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 2.1e-09 67.0 137 34.3
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 2.8e-09 66.6 97 44.3
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 4.7e-09 65.9 114 38.6
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 4.7e-09 65.9 77 48.1
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 6.2e-09 65.5 168 29.2
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.4e-08 64.3 114 37.7
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 1.8e-08 63.9 76 47.4
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 2.3e-08 63.5 108 39.8
Manes.01G173566 Manihot esculenta HOM05D065945 ORTHO05D004692 2.3e-08 63.5 87 44.8
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 2.3e-08 63.5 87 40.2
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 2.3e-08 63.5 87 40.2
Aqoxy1G03565 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 3.1e-08 63.2 101 39.6
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 3.1e-08 63.2 120 35.0
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 8.9e-08 61.6 121 32.2
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 8.9e-08 61.6 161 34.2
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.2e-07 61.2 144 28.5
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.5e-07 60.8 164 30.5
Aqoxy4G00226 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.0e-07 60.5 167 29.3
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 3.4e-07 59.7 50 54.0
Mapoly0026s0046 Marchantia polymorpha HOM05D004190 ORTHO05D004692 3.4e-07 59.7 104 37.5
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 4.4e-07 59.3 133 30.1
Solyc10g049990.1 Solanum lycopersicum HOM05D004190 ORTHO05D018124 2.2e-06 57.0 57 49.1
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 2.9e-06 56.6 148 32.4
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 6.4e-06 55.5 89 42.7
GSVIVG01024953001 Vitis vinifera HOM05D004190 ORTHO05D004692 6.4e-06 55.5 66 43.9
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 8.4e-06 55.1 61 47.5


User provided reference genes

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