Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0003230 Simmondsia chinensis HOM05D002561 ORTHO05D006466 2.5e-195 685.3 347 100.0
Sc04g0004740 Simmondsia chinensis HOM05D002561 ORTHO05D006466 1.9e-166 589.3 348 86.5
Sc24g0000990 Simmondsia chinensis HOM05D002561 ORTHO05D006466 7.2e-142 507.7 453 63.1
Ah.03g138410 Amaranthus hybridus HOM05D002561 ORTHO05D006466 6.7e-132 474.6 453 58.9
Manes.13G142500 Manihot esculenta HOM05D002561 ORTHO05D006466 1.0e-127 460.7 421 60.3
GSVIVG01020601001 Vitis vinifera HOM05D002561 ORTHO05D006466 8.5e-127 457.6 453 56.7
Hund07915 Selenicereus undatus HOM05D002561 ORTHO05D006466 2.5e-126 456.1 453 57.6
Dinv07536 Davidia involucrata HOM05D002561 ORTHO05D006466 9.4e-126 454.1 453 57.0
MSTRG.15131 Avicennia marina HOM05D002561 ORTHO05D006466 1.2e-125 453.8 453 56.5
CSS0024007 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D006466 1.2e-125 453.8 453 56.3
Dinv10164 Davidia involucrata HOM05D002561 ORTHO05D006466 2.1e-125 453.0 453 56.7
Nn1g06426 Nelumbo nucifera HOM05D002561 ORTHO05D006466 3.6e-125 452.2 453 57.0
Potri.017G014700 Populus trichocarpa HOM05D002561 ORTHO05D006466 6.1e-125 451.4 453 56.1
TAR624G0407 Trochodendron aralioides HOM05D002561 ORTHO05D006466 8.0e-125 451.1 453 57.4
Eucgr.K01052 Eucalyptus grandis HOM05D002561 ORTHO05D006466 1.4e-124 450.3 453 56.3
EL10Ac9g20811 Beta vulgaris HOM05D002561 ORTHO05D006466 6.7e-124 448.0 453 55.8
Potri.007G137300 Populus trichocarpa HOM05D002561 ORTHO05D006466 1.5e-123 446.8 453 55.6
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 3.3e-123 445.7 453 56.7
Gohir.D02G177700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 4.4e-123 445.3 454 56.2
Actinidia11101 Actinidia chinensis HOM05D002561 ORTHO05D006466 5.7e-123 444.9 453 55.8
MBI07_g29117_MAGBIO Magnolia biondii HOM05D002561 ORTHO05D006466 1.3e-122 443.7 453 56.1
Cc05_g07670 Coffea canephora HOM05D002561 ORTHO05D006466 3.7e-122 442.2 453 55.4
Cfa014656 Carpinus fangiana HOM05D002561 ORTHO05D006466 6.3e-122 441.4 453 54.7
Ciclev10015209m.g Citrus clementina HOM05D002561 ORTHO05D006466 6.3e-122 441.4 453 55.6
COL.COLO4_28034 Corchorus olitorius HOM05D002561 ORTHO05D006466 6.3e-122 441.4 453 56.3
Gohir.A03G154700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 6.3e-122 441.4 454 55.9
Cpa.g.sc83.89 Carica papaya HOM05D002561 ORTHO05D006466 1.8e-121 439.9 453 55.8
CiPaw.03G181000 Carya illinoinensis HOM05D002561 ORTHO05D006466 5.3e-121 438.3 453 55.2
MELO3C018869.2 Cucumis melo HOM05D002561 ORTHO05D006466 5.3e-121 438.3 452 54.9
Thecc.02G185400 Theobroma cacao HOM05D002561 ORTHO05D006466 2.0e-120 436.4 453 55.4
CsaV3_7G003080 Cucumis sativus L. HOM05D002561 ORTHO05D006466 2.6e-120 436.0 452 54.2
CANSAT64G1696 Cannabis sativa HOM05D002561 ORTHO05D006466 3.5e-120 435.6 453 55.4
Lj8C108T5 Lonicera japonica HOM05D002561 ORTHO05D006466 7.7e-120 434.5 453 55.2
Duzib052G0349 Durio zibethinus HOM05D002561 ORTHO05D006466 1.0e-119 434.1 454 55.1
TWI14G0319 Tripterygium wilfordii HOM05D002561 ORTHO05D006466 1.3e-119 433.7 454 54.8
Sed0023046 Sechium edule HOM05D002561 ORTHO05D006466 1.7e-119 433.3 452 54.0
Sabra17G0011900 Salix brachista HOM05D002561 ORTHO05D006466 2.9e-119 432.6 486 51.9
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 2.9e-119 432.6 469 53.1
ECA240G2497 Erigeron canadensis HOM05D002561 ORTHO05D006466 3.8e-119 432.2 453 53.9
Nitab4.5_0000621g0150 Nicotiana tabacum HOM05D002561 ORTHO05D006466 6.5e-119 431.4 454 54.8
RcHm_v2.0_Chr6g0267881 Rosa chinensis HOM05D002561 ORTHO05D006466 6.5e-119 431.4 453 54.3
Lsat_1_v5_gn_4_64440 Lactuca sativa HOM05D002561 ORTHO05D006466 8.5e-119 431.0 450 54.4
Sp7g26430 Schrenkiella parvula HOM05D002561 ORTHO05D006466 8.5e-119 431.0 453 54.1
PGR142G4043 Punica granatum HOM05D002561 ORTHO05D006466 1.9e-118 429.9 454 53.3
AL7G24110 Arabidopsis lyrata HOM05D002561 ORTHO05D006466 1.2e-117 427.2 453 54.1
Migut.D00238 Erythranthe guttata HOM05D002561 ORTHO05D006466 1.2e-117 427.2 450 54.2
Prupe.1G573700 Prunus persica HOM05D002561 ORTHO05D006466 1.2e-117 427.2 448 53.8
DCAR_013032 Daucus carota HOM05D002561 ORTHO05D006466 1.6e-117 426.8 447 54.8
THA.LOC104804051 Tarenaya hassleriana HOM05D002561 ORTHO05D006466 2.1e-117 426.4 453 53.4
Carub.0007s1225 Capsella rubella HOM05D002561 ORTHO05D006466 3.6e-117 425.6 453 53.9
AT4G28450 Arabidopsis thaliana HOM05D002561 ORTHO05D006466 6.1e-117 424.9 453 54.1
CARHR236220 Cardamine hirsuta HOM05D002561 ORTHO05D006466 6.1e-117 424.9 453 53.2
Aa31LG2G21970 Aethionema arabicum HOM05D002561 ORTHO05D006466 8.0e-117 424.5 453 53.6
HPP92_000278 Vanilla planifolia HOM05D002561 ORTHO05D006466 8.0e-117 424.5 453 54.3
Prupe.6G177000 Prunus persica HOM05D002561 ORTHO05D006466 1.0e-116 424.1 449 53.9
TWI59G1106 Tripterygium wilfordii HOM05D002561 ORTHO05D006466 1.0e-116 424.1 453 54.3
HanXRQChr05g0140561 Helianthus annuus HOM05D002561 ORTHO05D006466 1.8e-116 423.3 454 52.9
Nitab4.5_0004546g0040 Nicotiana tabacum HOM05D002561 ORTHO05D006466 5.2e-116 421.8 465 53.1
Glyma.02G251700 Glycine max HOM05D002561 ORTHO05D006466 4.4e-115 418.7 453 52.8
FAN20G3107 Fragaria x ananassa HOM05D002561 ORTHO05D006466 5.7e-115 418.3 453 53.4
FAN27G0984 Fragaria x ananassa HOM05D002561 ORTHO05D006466 5.7e-115 418.3 453 53.4
Lalb_Chr25g0280621 Lupinus albus HOM05D002561 ORTHO05D006466 9.7e-115 417.5 453 52.5
Phvul.006G037700 Phaseolus vulgaris HOM05D002561 ORTHO05D006466 9.7e-115 417.5 453 52.1
Medtr1g022960 Medicago truncatula HOM05D002561 ORTHO05D006466 1.3e-114 417.2 453 51.7
ATR0665G052 Amborella trichopoda HOM05D002561 ORTHO05D006466 1.7e-114 416.8 453 51.9
FvH4_2g10410 Fragaria vesca HOM05D002561 ORTHO05D006466 1.7e-114 416.8 453 53.2
Atru.chr6.2875 Acer truncatum HOM05D002561 ORTHO05D006466 2.2e-114 416.4 432 54.9
PSO210G7210 Papaver somniferum HOM05D002561 ORTHO05D006466 1.8e-113 413.3 453 52.1
Sopen07g027630 Solanum pennellii HOM05D002561 ORTHO05D006466 3.1e-113 412.5 453 52.3
Zm00001eb064830 Zea mays HOM05D002561 ORTHO05D006466 3.1e-113 412.5 453 52.5
PGSC0003DMG401009395 Solanum tuberosum HOM05D002561 ORTHO05D006466 4.1e-113 412.1 453 51.7
ClCG02G002370 Citrullus lanatus HOM05D002561 ORTHO05D006466 7.0e-113 411.4 452 52.9
BcaC06g32621 Brassica carinata HOM05D002561 ORTHO05D006466 9.1e-113 411.0 453 51.9
Solyc07g053660.3 Solanum lycopersicum HOM05D002561 ORTHO05D006466 9.1e-113 411.0 453 52.1
C07p56220 Brassica napus HOM05D002561 ORTHO05D006466 1.2e-112 410.6 454 51.8
BolC7t46099H Brassica oleracea HOM05D002561 ORTHO05D006466 1.2e-112 410.6 454 51.8
Lj3g0012051 Lotus japonicus HOM05D002561 ORTHO05D006466 1.6e-112 410.2 455 52.1
FAN15G2087 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.0e-112 409.8 451 52.8
A03p58100 Brassica napus HOM05D002561 ORTHO05D006466 2.7e-112 409.5 454 51.5
BraA03t14876Z Brassica rapa HOM05D002561 ORTHO05D006466 2.7e-112 409.5 454 51.5
Thhalv10025176m.g Eutrema salsugineum HOM05D002561 ORTHO05D006466 3.5e-112 409.1 454 52.0
unitig_85.g27364 Utricularia gibba HOM05D002561 ORTHO05D006466 5.9e-112 408.3 423 54.8
arahy.Tifrunner.gnm1.ann1.TSZ6TX Arachis hypogaea HOM05D002561 ORTHO05D006466 1.3e-111 407.1 453 52.5
MD08G1220200 Malus domestica HOM05D002561 ORTHO05D006466 2.9e-111 406.0 449 51.0
Sabra07G0110300 Salix brachista HOM05D002292 ORTHO05D003256 3.8e-111 405.6 467 51.2
CDE03G0236 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 4.2e-110 402.1 451 52.1
PSO782G0979 Papaver somniferum HOM05D002561 ORTHO05D006466 1.6e-109 400.2 456 50.0
Ca_13381_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 1.4e-108 397.1 432 52.5
Ca_30047_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 1.4e-108 397.1 432 52.5
Rhsim06G0138000 Rhododendron simsii HOM05D002561 ORTHO05D006466 5.2e-108 395.2 495 47.9
SGA_v2.0_scaffold70G23496 Striga asiatica HOM05D002561 ORTHO05D006466 3.4e-107 392.5 453 51.0
Psat6g009760 Pisum sativum HOM05D002561 ORTHO05D006466 7.5e-107 391.3 452 51.5
arahy.Tifrunner.gnm1.ann1.UE4GYS Arachis hypogaea HOM05D002561 ORTHO05D006466 7.0e-105 384.8 453 50.3
PSO832G1390 Papaver somniferum HOM05D002561 ORTHO05D006466 7.0e-105 384.8 453 49.7
TPR.G22970 Trifolium pratense HOM05D002561 ORTHO05D006466 5.9e-104 381.7 430 50.7
CAN.G209.6 Capsicum annuum HOM05D002561 ORTHO05D006466 2.3e-103 379.8 453 49.9
Peaxi162Scf00845g00022 Petunia axillaris HOM05D002561 ORTHO05D006466 2.3e-103 379.8 464 50.0
QL08p040074 Quercus lobata HOM05D002561 ORTHO05D006466 1.1e-102 377.5 508 46.1
Aqoxy4G00646 Aquilegia oxysepala HOM05D002561 ORTHO05D006466 2.3e-100 369.8 453 47.2
AUR62008772 Chenopodium quinoa HOM05D002561 ORTHO05D006466 2.7e-96 356.3 410 51.2
TPR.G30494 Trifolium pratense HOM05D002561 ORTHO05D006466 2.9e-95 352.8 469 45.8
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 3.3e-94 349.4 451 46.1
AagrBONN_evm.TU.Sc2ySwM_117.187 Anthoceros agrestis HOM05D002561 ORTHO05D006466 2.1e-93 346.7 452 44.9
Dinv00035 Davidia involucrata HOM05D002561 ORTHO05D006466 3.1e-92 342.8 232 75.9
SMO347G0106 Selaginella moellendorffii HOM05D002561 ORTHO05D006466 2.0e-91 340.1 452 46.2
Sc04g0004800 Simmondsia chinensis HOM05D002561 ORTHO05D006466 6.4e-90 335.1 207 84.1
Glyma.14G065100 Glycine max HOM05D002561 ORTHO05D006466 2.3e-84 316.6 232 69.4
MCO01G363 Micromonas commoda HOM05D002561 ORTHO05D006466 9.5e-78 294.7 460 39.3
PSO478G0717 Papaver somniferum HOM05D002561 ORTHO05D006466 3.1e-76 289.7 232 67.2
MD15G1410700 Malus domestica HOM05D002561 ORTHO05D006466 4.0e-76 289.3 228 65.4
Hma1.2p1_0002F.1_g002200 Hydrangea macrophylla HOM05D002561 ORTHO05D006466 9.2e-73 278.1 453 42.8
PRCOL_00005495 Prasinoderma coloniale HOM05D002561 ORTHO05D006466 4.6e-72 275.8 460 36.7
AUR62025466 Chenopodium quinoa HOM05D002561 ORTHO05D006466 2.5e-70 270.0 369 46.3
Cre07.g318702 Chlamydomonas reinhardtii HOM05D002561 ORTHO05D006466 9.9e-67 258.1 451 37.5
Actinidia11004 Actinidia chinensis HOM05D002561 ORTHO05D006466 2.2e-66 256.9 338 46.7
Sc04g0004770 Simmondsia chinensis HOM05D002561 ORTHO05D006466 3.5e-64 249.6 187 69.0
FAN07G0711 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.3e-63 246.9 163 74.2
Sc04g0004780 Simmondsia chinensis HOM05D002561 ORTHO05D006466 3.0e-63 246.5 189 71.4
CBR_g34460 Chara braunii HOM05D002561 ORTHO05D006466 1.3e-61 241.1 404 39.6
TAR626G1404 Trochodendron aralioides HOM05D002561 ORTHO05D006466 2.4e-60 236.9 391 42.2
Pp3c9_6000 Physcomitrium patens HOM05D002561 ORTHO05D006466 1.3e-55 221.1 312 41.3
Os01g0238900 Oryza sativa ssp. japonica HOM05D002561 ORTHO05D006466 1.1e-41 174.9 271 42.1
COL.COLO4_18046 Corchorus olitorius HOM05D002561 ORTHO05D006466 6.0e-40 169.1 198 52.5
Haze_13235 Corylus avellana HOM05D002561 ORTHO05D006466 6.2e-37 159.1 90 82.2
Haze_13238 Corylus avellana HOM05D002561 ORTHO05D006466 6.2e-37 159.1 90 82.2
Oeu016012.1 Olea europaea HOM05D002561 ORTHO05D006466 1.5e-35 154.5 89 83.1
FAN24G2704 Fragaria x ananassa HOM05D002561 ORTHO05D006466 4.5e-35 152.9 90 77.8
MD15G1410600 Malus domestica HOM05D002561 ORTHO05D006466 8.4e-34 148.7 90 76.7
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 1.9e-33 147.5 242 39.7
MBI07_g29113_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D003010 5.7e-30 136.0 228 43.0
FvH4_4g06150 Fragaria vesca HOM05D002561 ORTHO05D006466 1.0e-26 125.2 117 59.8
BcaB03g16272 Brassica carinata HOM05D002561 ORTHO05D006466 2.5e-17 94.0 54 81.5
FAN07G1962 Fragaria x ananassa HOM05D002561 ORTHO05D006466 5.1e-15 86.3 89 51.7
FAN27G3439 Fragaria x ananassa HOM05D002561 ORTHO05D014694 1.8e-12 77.8 73 52.1


User provided reference genes

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