Gene: AT4G28450

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G28450
  • Transcript Identifier AT4G28450.1
  • Gene Type Coding gene
  • Location Chr4 : 14061724-14064582 : negative

Gene Family Information

  • ID HOM05D002561
  • #Genes/#Species 266/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G28450.1
  • uniprot Q93VK1

Descriptions

  • Description WD repeat and SOF domain-containing protein 1
  • Computational description nucleotide binding;protein binding; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Sof1-like protein (InterPro:IPR007287), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 37337 Blast hits to 21127 proteins in 676 species: Archae - 38; Bacteria - 5948; Metazoa - 14528; Fungi - 7710; Plants - 4379; Viruses - 0; Other Eukaryotes - 4734 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
Gene Ontologyprotein ubiquitination
GO:0000462
IBA
Gene Ontologymaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0080008
IPI
IBA
Gene OntologyCul4-RING E3 ubiquitin ligase complex1 2
GO:0032040
IBA
Gene Ontologysmall-subunit processome1
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IBA
Gene Ontologynucleolus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR001680 WD40 repeat
IPR013979 Translation initiation factor, beta propellor-like domain
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR007287 Sof1-like protein
IPR020472 G-protein beta WD-40 repeat
Mapman id Description
17.1.3.2.1.7 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (Sof1)