Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 2636.3 1319 100.0
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1738.4 1337 66.9
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1718.7 1339 65.6
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1713.7 1337 66.1
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1695.2 1337 65.3
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1677.1 1336 63.3
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1676.8 1327 63.8
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1639.8 1333 62.0
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1639.0 1342 62.5
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1636.3 1335 62.6
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1608.2 1338 63.2
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1607.0 1288 63.0
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1604.3 1341 61.4
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1603.6 1335 61.3
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1596.6 1339 61.0
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1594.3 1401 59.6
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1592.4 1334 60.9
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1591.2 1338 60.6
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1590.5 1345 58.7
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1588.2 1335 61.3
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1586.6 1257 63.4
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1584.3 1338 60.4
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1577.8 1337 61.3
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1571.2 1336 60.0
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1570.8 1320 61.5
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1568.5 1337 60.1
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1567.4 1335 60.1
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1567.4 1336 59.8
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1567.0 1348 60.5
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1560.8 1335 59.9
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1560.0 1336 60.7
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1558.9 1347 60.2
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1558.5 1335 59.9
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1554.3 1338 60.2
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1545.4 1479 56.2
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1544.3 1338 60.1
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1543.9 1303 61.0
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1543.1 1350 59.0
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1543.1 1343 59.9
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1537.3 1336 59.7
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1532.3 1339 59.7
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1521.5 1341 59.4
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1515.7 1332 59.8
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1513.0 1330 58.3
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1508.8 1333 58.4
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1508.4 1339 58.6
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1508.0 1342 58.0
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1501.1 1346 57.7
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1499.2 1338 58.0
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1496.5 1343 57.7
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1493.4 1343 57.7
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1492.2 1338 57.5
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1491.9 1330 59.6
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1489.6 1223 62.1
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1489.6 1338 57.6
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1486.1 1223 62.1
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1485.7 1333 58.0
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1485.3 1378 57.6
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1482.2 1326 58.3
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1478.0 1332 58.1
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1477.6 1340 57.8
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1477.2 1300 58.3
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1476.8 1337 57.1
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1476.5 1325 58.0
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1474.9 1341 57.6
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1470.7 1342 57.3
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1462.6 1337 57.7
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1461.8 1340 57.7
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1456.4 1341 57.3
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1448.7 1295 57.5
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1427.2 1337 56.5
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1412.9 1340 55.1
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1383.6 1323 55.4
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1373.6 1332 54.4
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1371.7 1251 56.0
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1366.3 1332 54.6
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1360.1 1332 54.6
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1359.4 1311 55.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1347.0 1333 53.8
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1340.5 1301 54.3
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1335.9 1327 54.0
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1333.5 1327 53.9
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1328.5 1325 53.4
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1325.1 1325 53.4
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1325.1 1325 53.4
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1322.0 1333 53.2
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1313.1 1335 52.5
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1267.7 1322 52.0
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1249.2 1315 51.3
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1233.8 1321 50.8
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1231.5 1330 51.1
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1203.0 1353 48.6
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1194.9 981 62.9
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1181.0 914 64.2
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1179.9 1077 57.4
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1109.0 984 58.7
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 1.6e-306 1056.6 1252 48.2
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 2.8e-303 1045.8 859 62.5
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 2.1e-274 949.9 1283 42.4
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 4.0e-270 935.6 1324 43.7
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 4.8e-255 885.6 1288 41.0
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 5.2e-233 812.4 1235 38.9
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 1.2e-232 811.2 1317 39.3
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 5.5e-227 792.3 964 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 9.8e-224 781.6 1137 41.1
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.4e-161 574.3 588 51.4
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 6.0e-157 559.7 482 59.3
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 3.7e-154 550.4 587 53.0
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 1.6e-117 428.7 1146 29.7
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 6.3e-106 390.2 295 62.7
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.3e-95 355.9 324 53.1
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.3e-95 355.9 364 53.3
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 6.8e-92 343.6 318 57.2
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 6.8e-92 343.6 1070 29.3
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 6.6e-79 300.4 295 59.7
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 4.0e-68 264.6 240 57.5
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 9.6e-62 243.4 194 62.4
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.6e-56 226.1 175 63.4
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 6.6e-55 220.7 321 40.8
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 3.0e-47 195.3 312 39.7
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.6e-40 172.9 154 57.1
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 3.4e-35 155.2 119 63.0
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 1.5e-30 139.8 126 56.3
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 2.9e-26 125.6 654 25.4
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.5e-19 103.2 98 52.0
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 5.9e-19 101.3 124 43.5
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 9.7e-14 84.0 75 58.7
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 2.2e-13 82.8 108 44.4
Ah.01g013690 Amaranthus hybridus HOM05D005691 ORTHO05D007096 2.9e-10 72.4 71 54.9
Ah.14g082590 Amaranthus hybridus HOM05D005691 ORTHO05D007096 2.9e-10 72.4 71 54.9
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.0e-10 71.6 66 57.6
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 3.3e-06 58.9 132 30.3


User provided reference genes

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