Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 9.7e-39 162.9 78 100.0
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 1.9e-18 95.5 59 74.6
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 2.5e-18 95.1 48 89.6
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 4.2e-18 94.4 50 86.0
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 9.5e-18 93.2 50 86.0
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 9.5e-18 93.2 50 86.0
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 9.5e-18 93.2 50 86.0
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 9.5e-18 93.2 50 84.0
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.2e-17 92.8 48 87.5
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 1.2e-17 92.8 50 84.0
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 1.2e-17 92.8 50 82.0
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 1.6e-17 92.4 47 87.2
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 1.6e-17 92.4 48 85.4
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 1.6e-17 92.4 48 85.4
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 1.6e-17 92.4 48 85.4
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 1.6e-17 92.4 48 85.4
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 1.6e-17 92.4 50 86.0
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 2.1e-17 92.0 51 78.4
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.1e-17 92.0 47 87.2
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 2.1e-17 92.0 50 82.0
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 2.1e-17 92.0 48 85.4
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 2.8e-17 91.7 50 84.0
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 2.8e-17 91.7 50 80.0
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 2.8e-17 91.7 50 80.0
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 2.8e-17 91.7 50 80.0
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 2.8e-17 91.7 48 83.3
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 2.8e-17 91.7 50 84.0
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 3.6e-17 91.3 48 85.4
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 3.6e-17 91.3 48 83.3
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 4.7e-17 90.9 49 83.7
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 6.1e-17 90.5 48 87.5
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 6.1e-17 90.5 48 85.4
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 6.1e-17 90.5 48 83.3
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 8.0e-17 90.1 50 80.0
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 8.0e-17 90.1 48 81.2
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 8.0e-17 90.1 50 82.0
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 1.0e-16 89.7 48 85.4
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 1.0e-16 89.7 50 82.0
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 1.0e-16 89.7 47 87.2
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 1.0e-16 89.7 45 86.7
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 1.0e-16 89.7 50 80.0
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 1.0e-16 89.7 50 80.0
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 1.0e-16 89.7 48 85.4
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 1.4e-16 89.4 53 75.5
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 1.4e-16 89.4 48 79.2
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 1.4e-16 89.4 47 85.1
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 1.4e-16 89.4 47 85.1
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 1.4e-16 89.4 48 81.2
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 1.4e-16 89.4 48 83.3
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 1.4e-16 89.4 50 80.0
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 2.3e-16 88.6 48 81.2
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 2.3e-16 88.6 50 78.0
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 2.3e-16 88.6 50 78.0
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 2.3e-16 88.6 50 78.0
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 2.3e-16 88.6 50 80.0
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 2.3e-16 88.6 50 80.0
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 2.3e-16 88.6 45 88.9
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.3e-16 88.6 47 83.0
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 2.3e-16 88.6 50 80.0
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 2.3e-16 88.6 48 81.2
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 2.3e-16 88.6 50 80.0
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 2.3e-16 88.6 48 81.2
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 2.3e-16 88.6 50 80.0
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 3.0e-16 88.2 48 79.2
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 4.0e-16 87.8 50 78.0
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 4.0e-16 87.8 50 78.0
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 4.0e-16 87.8 50 78.0
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 4.0e-16 87.8 50 78.0
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 4.0e-16 87.8 50 78.0
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 4.0e-16 87.8 50 80.0
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 5.2e-16 87.4 50 78.0
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 5.2e-16 87.4 48 83.3
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 6.8e-16 87.0 50 78.0
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 6.8e-16 87.0 48 79.2
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 6.8e-16 87.0 48 81.2
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 6.8e-16 87.0 50 76.0
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 6.8e-16 87.0 50 82.0
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 6.8e-16 87.0 48 77.1
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 6.8e-16 87.0 48 85.4
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 8.9e-16 86.7 50 76.0
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 8.9e-16 86.7 50 80.0
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 8.9e-16 86.7 50 76.0
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 1.2e-15 86.3 48 77.1
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 1.2e-15 86.3 48 79.2
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 1.2e-15 86.3 48 81.2
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 1.2e-15 86.3 50 80.0
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 1.2e-15 86.3 50 80.0
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 1.2e-15 86.3 50 80.0
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 1.2e-15 86.3 48 83.3
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 1.5e-15 85.9 45 84.4
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.5e-15 85.9 47 83.0
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 1.5e-15 85.9 48 79.2
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 1.5e-15 85.9 47 80.9
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.5e-15 85.9 49 77.6
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 1.5e-15 85.9 45 82.2
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 2.0e-15 85.5 50 78.0
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 2.0e-15 85.5 48 79.2
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 2.6e-15 85.1 50 76.0
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 2.6e-15 85.1 50 74.0
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 2.6e-15 85.1 47 80.9
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 4.4e-15 84.3 48 79.2
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 4.4e-15 84.3 50 78.0
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 5.7e-15 84.0 50 76.0
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 5.7e-15 84.0 50 76.0
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 5.7e-15 84.0 50 76.0
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 5.7e-15 84.0 48 79.2
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 7.5e-15 83.6 50 72.0
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 7.5e-15 83.6 50 76.0
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 7.5e-15 83.6 50 76.0
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 7.5e-15 83.6 48 79.2
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 9.8e-15 83.2 48 79.2
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 9.8e-15 83.2 50 78.0
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 1.3e-14 82.8 48 72.9
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 1.7e-14 82.4 66 60.6
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 3.7e-14 81.3 47 76.6
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 8.3e-14 80.1 50 72.0
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 1.1e-13 79.7 48 75.0
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 1.1e-13 79.7 48 75.0
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 1.1e-13 79.7 48 75.0
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 1.1e-13 79.7 48 75.0
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 1.1e-13 79.7 48 75.0
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 1.4e-13 79.3 48 75.0
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 1.8e-13 79.0 45 77.8
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 4.1e-13 77.8 45 73.3
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 5.4e-13 77.4 45 77.8
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 1.6e-12 75.9 45 73.3
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 3.5e-12 74.7 45 71.1
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.6e-12 74.3 47 70.2
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 7.8e-12 73.6 50 60.0
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 7.8e-12 73.6 50 60.0
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.3e-11 72.8 45 68.9
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.3e-11 72.8 45 66.7
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 2.9e-11 71.6 47 63.8
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.9e-10 68.9 47 70.2
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 9.5e-10 66.6 45 64.4
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.5e-10 66.6 55 58.2
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.5e-10 66.6 55 58.2
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 8.0e-09 63.5 45 60.0
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 1.2e-07 59.7 36 75.0
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 2.9e-06 55.1 45 55.6


User provided reference genes

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