Gene: Sopen09g005560

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g005560
  • Transcript Identifier Sopen09g005560.2
  • Gene Type Coding gene
  • Location Spenn-ch09 : 4291396-4310059 : negative

Gene Family Information

  • ID HOM05D003688
  • #Genes/#Species 186/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g005560.2

Descriptions

  • Description Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. | proteolysis 6 (PRT6) | CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa , Zinc finger, N-recognin
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071596
IEA
InterProubiquitin-dependent protein catabolic process via the N-end rule pathway
GO:0050994
ISO
PLAZA Integrative Orthologyregulation of lipid catabolic process AT5G02310
GO:0006723
ISO
PLAZA Integrative Orthologycuticle hydrocarbon biosynthetic process AT5G02310
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G02310
GO:0010029
ISO
PLAZA Integrative Orthologyregulation of seed germination AT5G02310
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT5G02310
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT5G02310
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT5G02310
GO:0010025
ISO
PLAZA Integrative Orthologywax biosynthetic process AT5G02310

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0008270
IEA
InterProzinc ion binding
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT5G02310

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039164 E3 ubiquitin-protein ligase UBR1-like
IPR003126 Zinc finger, UBR-type
IPR044046 E3 ubiquitin-protein ligase UBR-like, C-terminal
IPR036390 Winged helix DNA-binding domain superfamily
Mapman id Description
19.2.1.2.2.1 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.Arg/N-recognin activities.type-I-residues E3 ubiquitin ligase (PRT6)