Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1619.4 889 100.0
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 5.5e-263 911.4 873 62.8
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 4.4e-260 901.7 805 65.6
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.7e-259 899.8 871 61.1
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 2.0e-257 892.9 873 57.5
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 8.5e-256 887.5 865 62.1
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 2.0e-249 866.3 871 57.5
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 2.1e-246 856.3 874 55.6
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 3.7e-243 845.5 886 58.4
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 8.6e-240 834.3 873 55.2
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.3e-239 832.4 885 55.5
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 1.2e-238 830.5 971 54.0
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 1.0e-237 827.4 947 53.6
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 5.7e-236 821.6 870 56.1
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 3.7e-235 818.9 886 54.5
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 3.2e-234 815.8 870 55.9
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 3.5e-233 812.4 914 53.8
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 5.9e-233 811.6 881 58.2
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 7.8e-233 811.2 934 52.2
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 2.9e-232 809.3 873 55.7
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 3.9e-232 808.9 877 54.0
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 4.3e-231 805.4 929 51.8
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.6e-231 805.1 887 55.0
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 1.2e-230 803.9 910 53.8
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 2.8e-230 802.7 887 54.9
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.8e-229 800.0 930 53.4
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 5.2e-229 798.5 897 54.8
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 5.2e-229 798.5 907 54.8
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 8.9e-229 797.7 908 53.9
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 4.4e-228 795.4 873 57.3
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 4.4e-228 795.4 873 57.4
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 2.9e-227 792.7 870 54.0
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 6.4e-227 791.6 894 54.9
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 6.4e-227 791.6 921 53.3
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.4e-226 789.6 925 52.2
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 3.2e-226 789.3 960 50.6
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.2e-226 789.3 887 52.8
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 5.4e-226 788.5 929 53.2
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 2.7e-225 786.2 874 58.0
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 1.7e-224 783.5 873 53.4
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 2.5e-223 779.6 871 52.7
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 5.6e-223 778.5 873 53.2
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.2e-222 777.3 880 55.2
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 1.4e-221 773.9 874 53.1
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.8e-221 773.5 888 54.1
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.8e-221 773.5 874 53.1
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.2e-220 770.8 874 52.7
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 2.6e-220 769.6 875 51.9
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 1.3e-219 767.3 876 54.8
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 3.2e-218 762.7 871 52.6
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 2.5e-215 753.1 946 49.4
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.3e-213 746.5 891 52.5
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 8.9e-213 744.6 874 51.5
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.2e-212 744.2 886 52.8
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.1e-210 737.6 883 54.4
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 1.4e-210 737.3 909 48.6
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 5.4e-210 735.3 884 54.4
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 9.2e-210 734.6 870 52.5
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 3.5e-209 732.6 898 50.7
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 3.8e-203 712.6 888 50.1
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 3.5e-201 706.1 883 49.8
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 2.5e-199 699.9 867 51.1
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 2.8e-198 696.4 869 49.7
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 4.0e-197 692.6 854 50.7
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 4.0e-197 692.6 871 49.5
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.2e-196 691.0 943 47.0
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.2e-196 691.0 851 51.9
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 4.4e-196 689.1 635 60.9
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 5.8e-196 688.7 764 52.7
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 8.4e-195 684.9 933 47.1
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.1e-194 684.5 889 49.8
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 4.2e-194 682.6 889 49.4
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 5.4e-194 682.2 914 48.0
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.2e-193 681.0 877 49.1
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.2e-193 681.0 877 49.1
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 2.3e-192 676.8 877 48.9
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.9e-191 673.7 1019 44.9
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 1.9e-191 673.7 856 51.3
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 2.8e-190 669.8 877 50.2
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 4.0e-189 666.0 880 46.9
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 8.7e-184 648.3 976 46.7
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 3.3e-183 646.4 878 46.1
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 1.3e-182 644.4 877 48.7
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.6e-182 644.0 915 45.6
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 1.6e-182 644.0 747 54.8
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.2e-180 637.9 903 47.6
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 2.2e-179 633.6 644 56.4
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 4.8e-174 615.9 833 46.1
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 3.1e-173 613.2 688 54.7
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 9.0e-173 611.7 886 47.6
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 9.0e-173 611.7 810 48.9
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 2.9e-171 606.7 890 44.8
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 2.9e-171 606.7 890 44.8
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 5.5e-170 602.4 875 46.2
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.6e-169 600.9 875 46.1
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 8.7e-168 595.1 833 47.2
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.1e-165 588.2 973 44.1
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 2.9e-163 580.1 879 47.2
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 3.8e-163 579.7 852 44.6
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 5.5e-162 575.9 475 66.1
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 7.9e-161 572.0 555 58.9
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 1.4e-160 571.2 873 44.9
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 3.0e-160 570.1 873 44.4
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 3.0e-160 570.1 873 44.4
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 9.1e-157 558.5 438 67.8
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 9.4e-154 548.5 368 75.8
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.1e-151 541.6 688 52.8
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 1.8e-149 534.3 682 49.0
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 1.8e-149 534.3 682 49.0
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 4.1e-149 533.1 888 42.3
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 2.4e-141 507.3 697 45.9
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 5.3e-141 506.1 545 54.3
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.3e-136 490.7 910 40.0
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 5.2e-136 489.6 818 42.8
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 4.9e-126 456.4 692 45.4
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 1.2e-124 451.8 691 43.3
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 2.8e-121 440.7 719 41.4
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 3.4e-119 433.7 699 42.5
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 7.5e-119 432.6 877 41.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 3.3e-106 390.6 503 47.9
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.2e-103 382.1 333 65.5
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 1.2e-100 372.1 274 71.2
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 5.1e-99 366.7 825 37.1
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.8e-96 356.3 554 47.8
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.8e-96 356.3 554 47.8
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.7e-91 341.7 794 35.0
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.2e-86 324.7 375 51.7
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.9e-85 321.6 210 79.0
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.8e-81 307.0 210 76.2
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 9.0e-80 302.8 517 40.2
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 1.0e-75 289.3 556 40.1
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 3.9e-67 260.8 224 64.3
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 7.6e-63 246.5 200 64.5
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 2.7e-52 211.5 390 38.5
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 6.3e-49 200.3 168 61.9
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.1e-44 185.3 149 69.1
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 5.1e-43 180.6 170 58.8
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.8e-41 174.9 338 37.6
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.1e-40 172.9 240 43.8
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 4.1e-40 171.0 137 67.2
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.9e-37 162.2 196 48.0
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 7.2e-37 160.2 281 43.8
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.6e-34 151.8 434 38.0
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 6.3e-33 147.1 123 58.5
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 2.3e-27 128.6 85 75.3
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 3.0e-27 128.3 75 82.7
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 2.0e-26 125.6 75 81.3
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 7.5e-26 123.6 402 28.4
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 4.1e-24 117.9 138 49.3
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.3e-22 112.8 99 57.6
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 3.7e-17 94.7 100 57.0
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 1.8e-16 92.4 491 28.7
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 3.2e-13 81.6 52 71.2
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.1e-12 79.0 57 63.2
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.4e-11 76.3 50 72.0
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 2.3e-11 75.5 81 49.4
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.2e-10 73.2 50 68.0
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 6.3e-09 67.4 49 65.3
Gorai.010G062100 Gossypium raimondii HOM05D000415 ORTHO05D019988 5.0e-06 57.8 36 75.0
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 6.6e-06 57.4 35 68.6


User provided reference genes

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