Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.2e-280 969.1 489 100.0
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 9.9e-206 720.3 409 88.5
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 1.7e-205 719.5 437 83.5
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.9e-205 718.8 402 87.8
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 4.9e-205 718.0 408 88.2
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 9.3e-204 713.8 406 88.4
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 9.3e-204 713.8 403 87.8
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 9.3e-204 713.8 406 87.4
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 1.6e-203 713.0 413 86.9
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.7e-203 712.2 403 87.3
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.5e-203 711.8 406 87.2
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.3e-202 709.9 403 87.1
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.3e-202 709.9 405 86.9
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.3e-202 709.9 406 86.9
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 1.3e-202 709.9 406 86.5
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.3e-202 709.9 407 87.5
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 5.1e-202 708.0 406 86.5
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 6.6e-202 707.6 429 82.1
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 8.7e-202 707.2 404 86.1
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.1e-201 706.8 406 87.2
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.9e-201 706.1 409 86.3
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.9e-201 706.1 406 86.5
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 3.3e-201 705.3 407 85.7
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 4.3e-201 704.9 402 86.6
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 5.6e-201 704.5 402 86.3
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.3e-200 703.4 408 86.8
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 2.1e-200 702.6 411 84.7
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 2.8e-200 702.2 417 84.4
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 2.8e-200 702.2 406 84.7
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 4.8e-200 701.4 405 84.9
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 6.2e-200 701.0 407 85.7
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 6.2e-200 701.0 407 86.5
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 8.1e-200 700.7 409 85.3
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.8e-199 699.5 412 84.7
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 2.4e-199 699.1 430 84.4
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 3.1e-199 698.7 409 85.3
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.5e-198 696.4 404 85.6
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.0e-198 696.0 402 85.6
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.0e-198 696.0 407 84.8
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 5.8e-198 694.5 406 86.5
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 7.6e-198 694.1 402 85.3
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 9.9e-198 693.7 406 85.0
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 1.3e-197 693.3 406 85.0
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.7e-197 693.0 420 83.1
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.7e-197 693.0 406 85.7
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.9e-197 692.2 402 85.6
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 4.9e-197 691.4 369 91.6
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 6.4e-197 691.0 407 84.8
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 8.4e-197 690.6 418 83.0
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 8.4e-197 690.6 402 85.6
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.1e-196 690.3 422 82.9
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.1e-196 690.3 402 85.3
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 1.1e-196 690.3 402 85.8
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 1.9e-196 689.5 408 84.6
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.9e-196 689.5 404 84.7
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.2e-196 688.7 410 83.9
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.2e-196 688.3 402 85.1
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 5.4e-196 688.0 404 85.1
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 7.1e-196 687.6 402 84.8
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.7e-195 685.6 357 93.3
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 3.5e-195 685.3 407 84.0
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 3.5e-195 685.3 436 79.6
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 3.5e-195 685.3 436 79.6
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 4.6e-195 684.9 415 83.1
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.0e-194 683.7 410 82.9
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 1.0e-194 683.7 375 90.1
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 3.0e-194 682.2 436 79.6
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 5.1e-194 681.4 402 84.3
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 5.1e-194 681.4 402 84.3
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 8.7e-194 680.6 410 82.7
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 8.7e-194 680.6 410 82.9
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.1e-193 680.2 411 82.5
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 1.1e-193 680.2 410 82.7
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.1e-193 680.2 410 83.4
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.1e-193 680.2 373 89.3
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.3e-193 678.7 364 91.8
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.3e-193 678.7 364 91.8
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 4.3e-193 678.3 357 92.2
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 4.3e-193 678.3 410 82.7
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 4.3e-193 678.3 405 84.0
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 5.6e-193 677.9 405 83.7
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 7.4e-193 677.6 375 89.1
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 9.6e-193 677.2 410 82.2
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.3e-192 676.8 410 82.4
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.3e-192 676.8 405 83.7
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 2.1e-192 676.0 404 83.4
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 3.7e-192 675.2 408 81.1
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 3.7e-192 675.2 405 83.5
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.1e-191 673.7 368 89.1
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 1.1e-191 673.7 407 83.0
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.4e-191 673.3 403 83.6
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 6.9e-191 671.0 405 83.5
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 1.2e-190 670.2 404 82.4
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.2e-190 670.2 381 86.4
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 2.6e-190 669.1 406 82.8
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 2.6e-190 669.1 415 81.4
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 4.5e-190 668.3 403 82.6
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.8e-190 667.9 406 82.5
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 5.8e-190 667.9 350 92.6
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 2.2e-189 666.0 423 79.7
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 2.9e-189 665.6 411 80.8
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 6.5e-189 664.5 366 88.3
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 5.5e-188 661.4 358 90.2
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 4.6e-187 658.3 364 89.0
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 7.9e-187 657.5 353 89.8
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.8e-186 656.4 413 80.6
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 7.9e-179 630.9 333 91.9
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 2.5e-177 625.9 375 83.7
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 4.3e-177 625.2 407 78.4
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.1e-175 620.5 365 82.5
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.8e-175 619.8 369 79.9
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 7.7e-174 614.4 353 83.3
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.8e-173 612.1 369 80.8
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.1e-172 610.5 407 76.4
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 2.5e-164 582.8 403 74.4
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 6.1e-163 578.2 338 84.6
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 7.5e-153 544.7 334 81.7
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 2.8e-152 542.7 319 84.3
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 3.1e-151 539.3 402 71.9
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 9.1e-151 537.7 357 73.1
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 2.2e-149 533.1 314 84.1
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.1e-147 526.6 371 69.3
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.4e-143 513.8 283 87.3
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 5.4e-143 511.9 308 82.5
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 6.8e-138 495.0 349 68.8
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 9.8e-137 491.1 365 68.2
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 8.3e-136 488.0 317 78.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.2e-134 484.2 289 84.1
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.6e-131 473.8 348 67.2
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.8e-127 460.3 248 89.5
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 7.0e-119 431.8 285 77.2
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.6e-117 425.2 277 75.5
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 8.4e-104 381.7 236 77.1
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 4.7e-99 365.9 321 62.9
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 6.3e-59 232.6 132 86.4
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 8.2e-59 232.3 132 85.6
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 1.7e-51 208.0 363 36.9
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.7e-48 198.0 118 80.5
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.2e-48 197.6 118 79.7
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 4.8e-43 179.9 104 86.5
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.4e-42 177.6 103 86.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.4e-42 177.6 103 86.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-36 158.7 94 84.0
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.3e-35 155.2 101 77.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.3e-35 152.9 94 83.0
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 4.2e-31 140.2 95 75.8
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 3.7e-27 127.1 105 68.6
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 2.4e-26 124.4 148 51.4
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.8e-24 117.1 71 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 8.0e-22 109.4 59 86.4
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.0e-20 104.8 81 67.9
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 4.4e-20 103.6 62 80.6
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 6.3e-19 99.8 47 89.4
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 3.1e-18 97.4 59 81.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 8.9e-13 79.3 42 92.9
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 1.3e-11 75.5 76 57.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.7e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 3.9e-08 63.9 53 64.2


User provided reference genes

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