Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 2267.3 1210 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1810.4 1210 78.9
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1795.4 1210 78.9
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1791.2 1210 78.1
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1790.4 1210 78.5
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1778.8 1196 79.2
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1736.9 1210 76.1
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1732.6 1210 75.8
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1731.1 1210 76.3
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1723.8 1214 76.4
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1722.2 1210 75.5
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1691.8 1210 74.9
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1682.9 1210 75.0
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1664.0 1210 73.3
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1658.3 1210 72.0
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1654.4 1210 72.8
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1650.2 1210 73.4
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1649.4 1329 68.8
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1640.9 1210 70.7
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1639.8 1210 72.1
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1636.7 1210 71.8
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1631.3 1210 72.0
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1629.8 1258 70.9
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1629.8 1210 71.6
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1629.4 1210 70.3
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1627.5 1364 66.3
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1616.3 1210 70.9
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1614.0 1211 71.0
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1610.9 1210 70.7
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1607.4 1210 70.3
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1605.9 1442 63.8
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1579.7 1210 70.9
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1577.4 1210 69.0
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1577.0 1210 69.1
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1572.0 1210 69.1
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1571.2 1210 70.0
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1562.4 1210 69.1
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1560.4 1210 68.8
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1559.7 1236 67.9
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1555.4 1210 69.1
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1555.0 1210 67.6
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1545.4 1218 67.8
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1540.4 1233 67.5
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1538.1 1210 68.8
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1536.9 1210 67.3
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1534.2 1191 68.8
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1532.7 1225 67.5
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1532.3 1225 67.5
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1532.3 1252 66.4
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1529.6 1211 68.2
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1518.4 1210 68.1
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1515.7 1210 66.9
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1515.7 1263 66.0
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1515.4 1210 66.4
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1500.0 1196 68.3
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1496.9 1210 66.8
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1490.7 1154 69.3
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1486.9 1210 65.4
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1481.1 1210 68.2
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1469.5 1210 65.8
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1452.6 1210 65.2
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1433.3 1147 67.9
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1433.3 1210 65.3
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1431.4 1211 65.0
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1426.8 1211 64.9
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1425.6 1211 64.8
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1412.9 1210 64.3
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1412.1 1256 63.9
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1409.8 1196 63.0
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1405.6 1210 62.6
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1405.6 1210 62.9
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1385.9 1210 62.1
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1381.7 1196 62.3
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1381.3 1210 62.1
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1307.4 1196 60.4
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1131.7 1025 61.1
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 0.0e+00 1085.5 902 65.6
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1084.3 1210 50.2
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.6e-305 1051.6 888 63.7
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 8.2e-302 1040.8 743 73.4
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 1.8e-296 1023.1 1059 55.3
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.3e-296 1022.7 759 71.8
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 6.5e-291 1004.6 1102 53.0
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 7.2e-290 1001.1 1212 47.0
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 7.0e-285 984.6 767 69.1
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 3.8e-267 925.6 955 53.8
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 5.0e-267 925.2 1213 43.9
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.6e-252 877.1 1215 44.4
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 3.3e-250 869.4 724 65.3
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 4.3e-250 869.0 790 62.4
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 9.9e-239 831.2 728 60.4
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 7.1e-237 825.1 1209 42.7
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.8e-228 795.0 594 71.2
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.8e-228 795.0 594 71.2
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 5.8e-207 725.7 562 69.4
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 7.6e-207 725.3 654 58.7
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 1.1e-200 704.9 1143 38.4
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 3.5e-196 689.9 524 68.9
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 8.7e-195 685.3 524 68.5
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.7e-169 600.1 524 62.6
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 4.8e-161 573.2 486 64.0
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.6e-156 557.0 451 65.2
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 5.2e-155 553.1 524 57.8
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.4e-154 550.4 375 76.0
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 2.4e-152 544.3 350 80.9
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 2.5e-149 534.3 628 50.8
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.3e-142 511.9 457 61.7
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.1e-136 492.3 296 85.1
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.1e-128 465.7 1265 30.1
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 4.3e-125 453.8 394 64.5
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 3.3e-117 427.6 242 89.7
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 1.4e-115 422.2 264 82.6
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.5e-106 392.1 357 60.2
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.6e-103 382.1 408 53.4
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 2.7e-103 381.3 317 64.0
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 1.0e-102 379.4 1262 28.2
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 2.7e-95 354.8 309 62.5
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 3.0e-94 351.3 187 94.1
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.8e-91 342.0 1285 26.9
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 3.4e-90 337.8 227 76.7
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 2.7e-87 328.2 1236 24.8
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.5e-56 226.1 115 96.5
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.3e-52 213.0 140 80.0
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 1.4e-51 209.5 117 87.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 9.1e-51 206.8 697 28.8
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 7.7e-50 203.8 139 79.1
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 1.5e-45 189.5 192 54.7
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.9e-42 177.6 96 93.8
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 2.2e-36 159.1 87 92.0
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.7e-34 152.1 106 76.4
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 1.0e-33 150.2 114 70.2
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.2e-31 143.3 225 41.3
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 1.2e-31 143.3 141 56.0
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 4.9e-28 131.3 167 46.1
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 9.8e-21 107.1 64 82.8
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.7e-20 106.3 106 58.5
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 2.9e-20 105.5 64 79.7
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 3.2e-19 102.1 77 68.8
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 4.1e-19 101.7 90 65.6
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 1.6e-15 89.7 128 49.2
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 4.7e-15 88.2 90 57.8
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 8.9e-14 84.0 265 28.3
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 5.8e-13 81.3 53 73.6
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.7e-09 69.7 63 63.5
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 4.3e-08 65.1 61 63.9
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 5.6e-08 64.7 56 67.9
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 8.1e-07 60.8 33 90.9


User provided reference genes

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