Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 2.0e-231 805.4 415 100.0
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 9.7e-170 600.5 366 83.3
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 6.3e-169 597.8 379 82.3
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 3.5e-167 592.0 371 81.4
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.7e-166 589.7 371 82.2
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.9e-166 589.0 371 80.9
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 6.5e-166 587.8 371 81.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 2.5e-165 585.9 371 81.9
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 9.4e-165 583.9 365 80.5
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 9.4e-165 583.9 371 81.7
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.6e-164 582.0 371 80.1
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 6.1e-164 581.3 370 80.3
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 8.0e-164 580.9 371 80.9
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.0e-163 580.5 371 81.4
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.0e-163 580.5 371 81.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 3.0e-163 578.9 371 79.8
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 4.0e-163 578.6 371 79.8
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 6.7e-163 577.8 370 81.1
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 8.8e-163 577.4 366 82.0
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-162 576.2 371 79.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.3e-162 575.5 371 79.5
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 4.4e-162 575.1 371 79.2
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.4e-162 575.1 371 79.5
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 5.7e-162 574.7 371 80.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 7.5e-162 574.3 371 80.3
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 7.5e-162 574.3 371 79.5
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.3e-161 573.5 366 80.9
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.2e-161 572.8 402 75.9
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 2.8e-161 572.4 370 78.4
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.7e-161 572.0 371 79.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.8e-161 571.6 368 80.7
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 6.3e-161 571.2 370 79.2
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 8.2e-161 570.9 371 79.5
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.1e-160 570.5 370 79.5
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.1e-160 568.9 371 78.7
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 3.1e-160 568.9 371 79.0
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 4.1e-160 568.5 371 78.4
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 4.1e-160 568.5 371 78.4
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 5.3e-160 568.2 371 78.7
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.2e-159 567.0 373 79.6
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.2e-159 567.0 370 79.5
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.6e-159 566.6 371 79.0
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 5.9e-159 564.7 371 78.7
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.3e-158 563.5 371 77.6
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.7e-158 563.1 369 79.9
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.2e-158 562.8 371 78.2
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 2.2e-158 562.8 371 77.6
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.2e-158 562.8 370 78.6
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.2e-158 562.8 371 78.2
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.2e-158 562.8 370 78.1
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.9e-158 562.4 371 78.2
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.9e-158 562.4 370 78.1
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 3.8e-158 562.0 371 77.1
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 3.8e-158 562.0 371 77.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.8e-158 562.0 371 77.9
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 3.8e-158 562.0 373 78.3
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 5.0e-158 561.6 370 77.8
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 8.5e-158 560.8 371 78.2
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-157 559.7 371 76.5
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.9e-157 559.7 371 76.8
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 4.2e-157 558.5 368 79.1
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 5.5e-157 558.1 370 77.8
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 7.2e-157 557.8 368 78.0
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 9.4e-157 557.4 377 77.5
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.2e-156 557.0 371 76.8
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.6e-156 556.6 366 77.6
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.7e-156 555.8 371 77.9
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.7e-156 555.8 368 78.0
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.7e-156 555.8 371 77.1
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 3.6e-156 555.4 371 76.8
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.6e-156 555.4 371 76.5
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 6.1e-156 554.7 371 76.5
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 8.8e-155 550.8 375 75.5
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 5.7e-154 548.1 383 74.7
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 5.7e-154 548.1 383 74.7
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 5.7e-154 548.1 371 75.5
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 7.5e-154 547.7 371 75.5
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 9.8e-154 547.4 383 74.4
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.2e-153 546.2 371 75.2
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 6.3e-153 544.7 377 75.3
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 8.3e-153 544.3 371 74.7
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.1e-152 543.9 371 75.5
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 2.4e-152 542.7 371 74.9
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.6e-151 540.0 370 74.3
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.0e-150 535.0 372 73.1
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 3.2e-149 532.3 371 74.4
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 2.3e-147 526.2 372 73.7
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 2.6e-146 522.7 372 72.3
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 9.8e-146 520.8 372 72.0
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.4e-144 516.9 371 73.3
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.4e-144 516.9 370 69.2
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-143 513.5 373 71.8
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 9.5e-141 504.2 371 71.4
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.4e-139 500.4 374 68.2
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.9e-134 482.3 375 69.1
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.5e-133 480.3 365 70.4
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.9e-133 479.9 371 66.0
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 3.1e-131 472.6 371 67.9
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 4.0e-131 472.2 305 78.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 6.4e-129 464.9 276 86.6
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 8.3e-129 464.5 296 80.4
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 2.7e-127 459.5 375 65.6
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 2.7e-127 459.5 363 64.7
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 6.6e-126 454.9 371 66.6
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 2.8e-124 449.5 374 60.7
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.5e-122 443.7 436 58.7
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.9e-121 438.7 367 59.4
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 7.8e-111 404.8 285 71.9
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-109 401.0 239 84.9
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.3e-109 399.1 239 84.5
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 3.6e-108 396.0 299 69.9
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 2.2e-105 386.7 313 66.8
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.9e-101 373.6 216 86.6
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.7e-97 360.5 284 68.0
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 8.1e-92 341.7 222 76.6
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 5.5e-88 328.9 366 47.3
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.8e-75 287.3 199 74.9
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-74 284.6 249 64.7
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.9e-70 269.6 173 78.0
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 5.3e-67 259.2 184 69.6
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.4e-62 244.6 156 79.5
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-59 233.4 204 62.3
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-57 227.6 204 57.8
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 3.7e-52 209.9 220 54.1
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 6.3e-52 209.1 365 35.6
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-48 197.2 161 61.5
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.2e-48 195.7 126 77.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-46 191.8 116 79.3
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-46 191.0 197 58.4
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 4.1e-43 179.9 300 35.3
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 4.1e-43 179.9 285 35.4
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.7e-42 177.2 102 83.3
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.7e-42 177.2 173 57.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.0e-41 175.3 161 61.5
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 4.8e-36 156.4 83 90.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 8.6e-33 145.6 108 67.6
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 7.2e-32 142.5 88 81.8
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.8e-31 140.6 80 83.8
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.8e-31 140.6 114 64.0
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.7e-28 131.3 107 63.6
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 1.7e-17 94.7 115 53.0
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 3.0e-17 94.0 156 39.1
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 3.3e-16 90.5 144 41.7
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 4.0e-14 83.6 146 42.5
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 8.9e-14 82.4 93 53.8
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.2e-13 82.0 93 53.8
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 2.2e-12 77.8 54 75.9
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.9e-11 74.7 57 68.4
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 6.0e-10 69.7 81 49.4
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.7e-07 60.1 65 52.3


User provided reference genes

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