Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 0.0e+00 1580.5 893 100.0
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 1.2e-311 1073.2 838 70.5
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.0e-301 1040.0 870 66.9
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 2.5e-295 1018.8 884 66.4
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.3e-291 1006.5 880 64.8
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 1.8e-277 959.5 808 67.1
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 2.6e-273 945.7 862 63.9
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 7.2e-271 937.6 897 62.8
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 9.4e-271 937.2 903 60.9
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 2.2e-267 926.0 904 59.1
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 2.2e-267 926.0 884 62.4
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 1.8e-266 922.9 825 64.5
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 3.1e-266 922.2 849 61.2
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 1.2e-265 920.2 900 62.3
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.3e-264 916.8 841 63.5
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 1.7e-264 916.4 909 58.6
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 1.5e-263 913.3 853 61.8
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 1.0e-261 907.1 822 63.0
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 3.4e-260 902.1 842 61.9
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 4.1e-258 895.2 824 62.0
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 7.7e-257 891.0 806 61.8
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.0e-256 890.6 810 62.2
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.7e-256 889.8 791 64.1
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 8.6e-256 887.5 894 61.5
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 3.4e-252 875.5 882 61.5
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 4.1e-250 868.6 774 64.2
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 9.2e-250 867.5 841 59.6
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.7e-249 865.9 812 60.7
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 4.5e-249 865.1 809 61.1
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 1.0e-248 864.0 838 60.3
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.3e-248 863.6 853 59.4
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 8.6e-248 860.9 845 59.4
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 8.6e-248 860.9 906 57.2
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.3e-247 859.0 845 59.4
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 6.1e-246 854.7 855 59.8
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 6.8e-245 851.3 787 61.2
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 6.8e-245 851.3 810 60.4
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 8.9e-245 850.9 844 57.8
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.0e-244 849.7 833 58.1
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 1.3e-243 847.0 842 60.9
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 7.0e-242 841.3 838 59.4
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 9.2e-242 840.9 835 57.8
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 2.0e-241 839.7 840 59.2
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 2.7e-241 839.3 817 59.0
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 4.6e-241 838.6 819 59.3
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 6.0e-241 838.2 838 59.3
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 6.0e-241 838.2 841 57.7
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 5.0e-240 835.1 824 60.8
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 1.2e-238 830.5 835 57.6
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 6.2e-238 828.2 815 58.7
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 8.0e-238 827.8 852 57.9
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.1e-237 827.4 820 58.4
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 2.3e-237 826.2 830 58.7
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 1.5e-236 823.5 896 58.5
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 9.8e-236 820.8 839 56.6
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.7e-235 820.1 827 57.9
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.9e-234 816.6 875 56.2
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 5.4e-234 815.1 903 56.1
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.2e-233 813.9 844 56.4
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 3.5e-233 812.4 849 57.7
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 4.6e-233 812.0 828 57.7
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 3.0e-232 809.3 884 57.0
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 3.9e-232 808.9 847 58.0
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 6.6e-232 808.1 838 58.0
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 1.5e-231 807.0 832 57.0
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 6.2e-230 801.6 831 57.3
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 6.2e-230 801.6 846 55.3
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.4e-229 800.4 844 56.4
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 2.9e-227 792.7 840 56.0
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.1e-226 790.8 839 57.0
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 5.4e-226 788.5 827 56.7
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 9.2e-226 787.7 814 56.3
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.2e-222 777.3 812 55.9
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 1.1e-221 774.2 840 56.9
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 5.2e-221 771.9 868 53.9
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 1.5e-220 770.4 845 54.4
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 1.1e-215 754.2 815 54.1
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.4e-213 747.3 835 55.8
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 9.9e-212 741.1 805 54.4
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 1.4e-210 737.3 734 57.6
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 1.9e-210 736.9 895 51.7
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 9.3e-210 734.6 857 54.4
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.6e-206 723.8 889 51.5
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 1.5e-204 717.2 863 51.7
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 8.4e-203 711.4 875 50.9
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 1.1e-197 694.5 892 49.6
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 6.5e-195 685.3 893 48.6
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 6.5e-195 685.3 889 49.2
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 1.1e-194 684.5 855 50.2
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 1.8e-192 677.2 892 47.2
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 1.8e-192 677.2 892 47.2
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 8.7e-192 674.9 873 48.7
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.1e-191 674.5 784 52.3
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 7.4e-191 671.8 804 51.5
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 8.2e-190 668.3 889 48.7
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 2.6e-188 663.3 869 48.2
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 5.0e-187 659.1 881 47.0
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 2.2e-182 643.7 888 47.0
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 6.9e-181 638.6 916 49.1
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 1.3e-179 634.4 921 46.0
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 3.8e-179 632.9 554 60.8
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 5.0e-179 632.5 777 48.0
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.9e-178 630.6 650 56.3
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 3.2e-178 629.8 879 46.8
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 8.8e-176 621.7 817 48.3
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 4.8e-174 615.9 879 46.1
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 3.2e-170 603.2 851 46.3
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 5.0e-163 579.3 852 46.0
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 8.0e-161 572.0 948 42.8
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.4e-157 560.5 415 71.3
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.6e-156 557.8 417 68.1
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 1.0e-155 555.1 806 44.0
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.6e-140 504.6 425 62.1
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 2.2e-134 484.2 778 41.1
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.3e-126 458.4 550 49.5
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.3e-110 405.2 401 59.6
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 1.1e-106 392.1 822 37.3
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.3e-97 362.1 374 59.9
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 7.1e-93 346.3 401 49.9
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 4.6e-92 343.6 398 51.8
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 8.7e-91 339.3 385 56.6
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 4.8e-89 333.6 404 50.5
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 2.9e-86 324.3 474 49.4
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 9.6e-82 309.3 288 56.2
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 8.1e-81 306.2 293 55.3
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 2.0e-79 301.6 345 52.5
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 4.5e-71 273.9 438 48.9
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 6.3e-65 253.4 828 28.0
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.1e-61 242.7 191 63.9
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 3.6e-60 237.7 168 71.4
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 1.1e-58 232.6 358 48.3
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 7.7e-55 219.9 926 27.9
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.6e-36 159.1 151 62.3
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.7e-36 157.5 151 62.3
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 9.8e-34 149.8 105 66.7
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 1.8e-32 145.6 97 71.1
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 1.3e-22 112.8 77 70.1
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.7e-22 112.5 88 63.6
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.9e-22 111.7 206 37.9
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.0e-18 99.0 86 52.3
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 9.2e-16 90.1 148 43.2
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.2e-15 89.7 89 55.1
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 7.8e-15 87.0 83 54.2
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 7.8e-15 87.0 89 52.8
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 7.5e-10 70.5 129 34.9
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 7.5e-10 70.5 87 47.1
EL10Ac2g03784 Beta vulgaris HOM05D004199 ORTHO05D019838 2.4e-08 65.5 60 61.7
EL10Ac3g06366 Beta vulgaris HOM05D004199 ORTHO05D019838 2.4e-08 65.5 60 61.7
EL10Ac5g11597 Beta vulgaris HOM05D004199 ORTHO05D019838 3.2e-08 65.1 157 34.4
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 4.1e-08 64.7 40 65.0
EL10Ac7g17540 Beta vulgaris HOM05D000966 ORTHO05D019838 1.6e-07 62.8 59 61.0
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 6.6e-06 57.4 62 45.2


User provided reference genes

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