Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 3.8e-151 538.1 267 100.0
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 7.0e-105 384.4 266 71.8
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.2e-104 383.6 258 73.3
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 6.0e-104 381.3 261 71.3
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.0e-103 380.6 258 71.7
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 4.3e-102 375.2 260 71.5
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 6.2e-101 371.3 266 69.2
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 2.3e-100 369.4 259 69.5
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.3e-100 369.4 270 68.1
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 4.0e-100 368.6 259 69.5
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 1.5e-99 366.7 259 68.7
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 2.6e-99 365.9 265 68.7
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 3.4e-99 365.5 266 68.4
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 4.4e-99 365.2 267 67.4
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 7.5e-99 364.4 265 66.4
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 7.5e-99 364.4 265 66.4
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 4.9e-98 361.7 259 69.1
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.1e-97 360.5 265 68.7
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.2e-97 359.0 230 75.7
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 3.2e-97 359.0 263 68.8
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.1e-97 357.8 230 75.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 9.2e-97 357.5 259 68.0
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.6e-96 356.7 267 67.4
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 2.1e-96 356.3 258 69.0
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 2.7e-96 355.9 266 68.4
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.5e-96 355.5 265 66.0
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 6.0e-96 354.8 260 66.9
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.3e-95 353.6 262 66.4
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 6.6e-95 351.3 262 67.6
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.1e-94 350.5 265 66.4
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 2.5e-94 349.4 260 67.3
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 4.3e-94 348.6 265 66.0
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 4.3e-94 348.6 262 67.6
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 5.6e-94 348.2 266 67.3
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.3e-94 347.8 266 66.9
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.2e-93 347.1 259 68.3
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.8e-93 345.9 266 66.5
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 8.1e-93 344.4 266 66.9
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 8.1e-93 344.4 278 63.3
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 1.1e-92 344.0 259 67.2
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 1.4e-92 343.6 231 72.7
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.4e-92 343.6 261 67.0
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.8e-92 343.2 260 66.9
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 8.9e-92 340.9 262 66.4
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 8.9e-92 340.9 258 65.9
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 1.5e-91 340.1 262 66.0
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 2.0e-91 339.7 259 66.4
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.6e-91 339.3 262 66.0
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 3.4e-91 339.0 259 65.6
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 4.4e-91 338.6 261 66.3
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 7.6e-91 337.8 262 65.6
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 2.2e-90 336.3 259 66.0
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 2.2e-90 336.3 262 65.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.4e-90 334.7 259 65.6
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.1e-89 334.0 259 66.0
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 1.1e-89 334.0 257 65.4
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 1.4e-89 333.6 262 65.3
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 1.9e-89 333.2 259 64.9
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 3.2e-89 332.4 259 64.5
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 4.1e-89 332.0 254 67.7
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 5.4e-89 331.6 260 65.8
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.6e-88 330.1 292 61.0
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 2.7e-88 329.3 290 59.0
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 6.0e-88 328.2 261 62.1
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.3e-87 327.0 263 62.0
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 8.6e-87 324.3 256 66.4
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 8.6e-87 324.3 255 65.5
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 1.1e-86 323.9 258 63.6
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.9e-86 323.2 263 62.7
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.9e-86 323.2 261 62.8
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.9e-86 323.2 260 65.0
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 1.6e-85 320.1 256 64.8
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.6e-85 320.1 256 65.2
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.1e-85 319.7 263 63.1
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.1e-85 319.7 257 63.4
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 2.8e-85 319.3 257 62.3
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 4.7e-85 318.5 262 61.8
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.4e-84 317.0 259 64.1
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 5.2e-84 315.1 256 63.7
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 6.8e-84 314.7 256 63.3
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 6.8e-84 314.7 256 63.3
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 7.6e-83 311.2 261 62.5
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 4.2e-81 305.4 260 60.4
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 9.3e-81 304.3 260 61.9
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 4.6e-80 302.0 282 58.9
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 6.6e-79 298.1 259 62.2
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 7.3e-78 294.7 266 59.0
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 9.0e-76 287.7 258 58.5
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 1.3e-74 283.9 257 58.0
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.7e-74 283.5 256 59.4
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 4.9e-74 282.0 259 58.7
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.4e-73 280.4 264 56.1
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 1.9e-73 280.0 261 56.3
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 7.1e-73 278.1 260 55.0
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 9.3e-73 277.7 266 54.9
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 6.6e-71 271.6 261 55.2
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 6.6e-71 271.6 261 55.2
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.9e-70 270.0 236 60.6
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 6.7e-63 245.0 266 48.1
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 2.6e-59 233.0 183 68.3
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 1.9e-57 226.9 287 45.3
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 6.0e-56 221.9 283 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 3.0e-55 219.5 228 53.1
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 6.3e-53 211.8 151 66.9
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 9.0e-52 208.0 243 47.7
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.1e-49 201.1 232 48.7
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.5e-49 199.9 151 64.9
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 1.1e-46 191.0 249 44.2
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 1.8e-44 183.7 190 51.6
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 1.9e-41 173.7 142 62.0
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 1.6e-40 170.6 116 74.1
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 8.8e-39 164.9 116 71.6
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.0e-38 163.7 115 71.3
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 3.3e-38 162.9 351 34.2
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.8e-37 159.8 144 60.4
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 5.3e-36 155.6 118 67.8
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.1e-30 137.9 150 52.0
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 4.8e-29 132.5 119 60.5
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 1.1e-28 131.3 144 51.4
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 1.6e-27 127.5 127 51.2
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.2e-19 101.3 77 64.9
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 1.0e-18 98.2 278 28.8
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 3.6e-16 89.7 70 60.0
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 8.3e-13 78.6 73 54.8
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 1.2e-11 74.7 54 64.8
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 2.9e-10 70.1 44 75.0
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.4e-07 61.2 41 68.3


User provided reference genes

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