Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 0.0e+00 1090.9 540 100.0
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 2.2e-275 951.8 552 85.1
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 3.1e-269 931.4 551 82.8
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 4.1e-269 931.0 551 82.8
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 2.2e-267 925.2 523 85.7
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 5.5e-266 920.6 551 82.2
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 1.4e-264 916.0 549 82.5
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 2.6e-263 911.8 526 84.0
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 2.2e-262 908.7 551 81.3
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 3.7e-262 907.9 554 80.3
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 6.3e-262 907.1 550 80.7
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 4.5e-260 901.0 553 80.7
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 1.7e-259 899.0 546 81.5
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 2.2e-259 898.7 551 80.8
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 5.0e-259 897.5 549 80.5
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 1.1e-258 896.3 550 80.7
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 1.1e-258 896.3 550 80.4
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 4.2e-258 894.4 550 79.6
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 4.2e-258 894.4 559 79.8
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 2.7e-257 891.7 566 79.0
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 3.6e-257 891.3 550 79.8
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 4.7e-257 891.0 550 79.6
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 8.0e-257 890.2 551 79.9
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 1.8e-256 889.0 551 80.4
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 2.3e-256 888.6 590 75.9
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 6.8e-256 887.1 551 79.5
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 6.8e-256 887.1 551 79.5
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 5.7e-255 884.0 544 79.4
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 7.5e-255 883.6 546 80.2
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 7.5e-255 883.6 550 79.6
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 7.5e-255 883.6 532 81.8
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 2.2e-254 882.1 543 79.6
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 4.8e-254 880.9 500 85.4
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 6.3e-254 880.6 578 76.8
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 1.2e-252 876.3 525 81.0
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 1.2e-252 876.3 548 78.5
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 1.6e-252 875.9 525 81.0
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 2.0e-252 875.5 525 80.8
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 2.7e-252 875.2 525 81.5
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 5.9e-252 874.0 545 78.2
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 7.7e-252 873.6 525 81.5
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 1.7e-251 872.5 539 79.6
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.7e-251 872.5 526 81.0
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 5.0e-251 870.9 544 78.9
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 5.0e-251 870.9 549 79.2
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 6.5e-251 870.5 544 78.9
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 1.5e-250 869.4 544 78.5
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 1.9e-250 869.0 516 81.4
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 5.5e-250 867.5 557 78.1
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 1.2e-249 866.3 524 80.9
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 2.1e-249 865.5 551 77.0
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.0e-248 863.2 544 78.1
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 6.8e-248 860.5 526 80.2
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 6.8e-248 860.5 525 81.0
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 8.8e-248 860.1 544 77.6
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 1.5e-247 859.4 513 81.3
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 3.4e-247 858.2 525 80.2
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 4.4e-247 857.8 525 80.6
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 7.5e-247 857.1 555 77.3
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.7e-246 855.9 550 76.7
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 2.2e-246 855.5 525 80.6
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 1.8e-245 852.4 553 75.9
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 4.1e-245 851.3 539 79.2
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 5.4e-245 850.9 530 78.9
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 7.0e-245 850.5 509 81.3
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 3.8e-243 844.7 533 78.4
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 1.9e-242 842.4 529 78.6
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 5.6e-242 840.9 529 78.4
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 6.8e-240 833.9 550 75.8
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 1.5e-239 832.8 519 79.2
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 2.6e-239 832.0 555 75.1
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 3.4e-239 831.6 554 75.3
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 3.4e-239 831.6 549 75.6
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 2.9e-238 828.6 552 74.6
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 3.0e-235 818.5 639 67.1
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 1.9e-234 815.8 535 75.9
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 4.3e-234 814.7 722 60.9
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 5.6e-234 814.3 548 74.3
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 1.6e-233 812.8 548 74.3
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 7.5e-231 803.9 520 77.9
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 2.2e-230 802.4 552 73.6
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.2e-228 796.6 541 74.1
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 6.0e-228 794.3 683 62.8
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 2.3e-227 792.3 540 74.3
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 2.3e-227 792.3 539 73.7
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 8.6e-227 790.4 576 70.3
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 9.5e-226 786.9 525 73.7
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 1.8e-216 756.1 590 68.0
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 9.2e-213 743.8 459 79.5
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 7.8e-212 740.7 524 68.7
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 2.4e-208 729.2 551 66.8
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 3.1e-208 728.8 505 73.7
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 5.4e-205 718.0 528 66.9
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 7.8e-204 714.1 555 67.7
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.6e-201 706.4 530 67.9
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 3.9e-195 685.3 540 63.7
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 2.6e-191 672.5 405 80.5
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 7.9e-188 661.0 407 80.1
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.6e-180 636.7 451 71.6
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 6.7e-155 551.6 340 76.8
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 4.2e-141 505.8 305 78.4
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 1.0e-134 484.6 287 84.0
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 2.3e-134 483.4 322 75.2
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 6.5e-134 481.9 270 82.2
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 5.5e-133 478.8 309 77.0
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 5.2e-131 472.2 554 48.0
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 1.2e-114 417.9 351 64.7
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 4.0e-107 392.9 258 77.5
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 1.3e-97 361.3 230 77.8
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 5.4e-88 329.3 201 76.6
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 7.8e-87 325.5 188 83.0
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 9.9e-74 282.0 492 36.4
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 1.4e-64 251.5 136 86.8
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 3.9e-62 243.4 160 73.1
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 2.7e-55 220.7 108 90.7
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 1.0e-54 218.8 133 80.5
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 3.0e-54 217.2 346 41.0
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 2.6e-50 204.1 137 75.9
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.0e-41 175.6 142 62.7
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 8.5e-41 172.6 109 67.9
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 1.7e-28 131.7 434 27.6
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 1.3e-25 122.1 100 66.0
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 1.5e-24 118.6 66 78.8
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 3.2e-24 117.5 71 77.5
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 1.5e-13 82.0 115 44.3
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 8.0e-07 59.7 55 65.5


User provided reference genes

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