Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 2.2e-140 502.3 256 100.0
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 1.0e-84 317.4 256 63.3
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 5.0e-84 315.1 260 62.3
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 1.2e-82 310.5 254 61.8
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 3.0e-81 305.8 256 60.5
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 2.0e-80 303.1 252 59.5
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 1.3e-79 300.4 256 59.4
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 2.2e-79 299.7 254 57.9
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 3.7e-79 298.9 255 57.6
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 3.7e-79 298.9 251 62.2
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 4.9e-79 298.5 254 58.3
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 3.2e-78 295.8 254 59.4
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 5.4e-78 295.0 254 59.8
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 3.5e-77 292.4 252 57.1
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 4.6e-77 292.0 256 57.4
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 7.8e-77 291.2 252 57.1
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 7.8e-77 291.2 252 57.1
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 1.0e-76 290.8 256 59.0
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 2.8e-74 282.7 255 57.3
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 3.6e-74 282.3 256 53.9
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 4.7e-74 282.0 252 54.8
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 4.7e-74 282.0 254 56.3
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 4.7e-74 282.0 257 56.4
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 6.2e-74 281.6 257 56.0
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.4e-73 280.4 257 56.4
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.4e-73 280.4 257 56.4
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 1.4e-73 280.4 240 59.2
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 4.0e-73 278.9 271 53.1
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 8.9e-73 277.7 255 54.9
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 3.4e-72 275.8 256 55.9
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 4.4e-72 275.4 249 55.0
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 5.8e-72 275.0 254 55.1
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 7.5e-72 274.6 255 54.9
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 1.3e-71 273.9 258 55.4
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.7e-71 273.5 257 55.3
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 2.2e-71 273.1 254 55.5
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 3.7e-71 272.3 240 57.5
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 1.4e-70 270.4 242 50.8
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 1.9e-70 270.0 256 55.1
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.9e-70 270.0 256 54.3
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 4.1e-70 268.9 252 54.0
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 5.4e-70 268.5 252 53.2
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 5.4e-70 268.5 256 53.5
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 7.0e-70 268.1 253 54.9
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 9.2e-70 267.7 244 56.1
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 1.2e-69 267.3 256 53.1
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 1.6e-69 266.9 256 53.1
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 2.1e-69 266.5 229 55.5
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 2.7e-69 266.2 256 52.3
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 2.7e-69 266.2 254 54.3
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 2.7e-69 266.2 256 54.3
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 2.7e-69 266.2 256 54.7
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 3.5e-69 265.8 256 54.7
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 4.6e-69 265.4 252 52.8
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 7.8e-69 264.6 256 52.0
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 1.0e-68 264.2 256 52.3
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 1.7e-68 263.5 256 54.7
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 2.3e-68 263.1 256 52.0
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 2.3e-68 263.1 256 52.0
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 5.1e-68 261.9 254 51.6
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 8.6e-68 261.2 260 51.9
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 8.6e-68 261.2 256 52.0
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 1.5e-67 260.4 242 54.5
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 2.5e-67 259.6 250 51.6
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 5.6e-67 258.5 255 50.2
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 5.6e-67 258.5 255 52.5
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 9.5e-67 257.7 263 50.6
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 9.5e-67 257.7 252 53.2
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 9.5e-67 257.7 254 52.0
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 1.2e-66 257.3 257 52.5
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 1.2e-66 257.3 252 52.8
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 6.2e-66 255.0 260 51.5
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 1.1e-65 254.2 258 51.9
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 1.8e-65 253.4 241 49.8
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 1.8e-65 253.4 241 49.8
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 2.3e-65 253.1 214 57.5
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 5.2e-65 251.9 241 49.8
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 6.8e-65 251.5 258 51.6
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 2.6e-64 249.6 254 50.4
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 3.4e-64 249.2 325 43.4
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 9.9e-64 247.7 241 53.5
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 2.2e-63 246.5 258 50.8
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 2.2e-63 246.5 253 50.6
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 4.9e-63 245.4 254 48.8
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 3.2e-62 242.7 254 49.6
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 4.1e-62 242.3 207 58.5
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 7.1e-62 241.5 241 48.5
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 7.1e-62 241.5 241 49.0
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 6.6e-60 235.0 225 54.2
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 2.5e-59 233.0 209 58.4
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 7.3e-59 231.5 211 52.1
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 9.9e-56 221.1 300 41.7
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 3.2e-54 216.1 239 51.0
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 5.4e-54 215.3 209 51.2
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 1.6e-53 213.8 179 57.0
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 2.5e-51 206.5 240 47.5
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 4.2e-46 189.1 254 39.0
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 1.1e-41 174.5 185 50.8
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 4.0e-41 172.6 278 37.1
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 5.3e-41 172.2 239 38.1
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 4.9e-39 165.6 121 64.5
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 1.9e-38 163.7 126 63.5
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 4.6e-37 159.1 180 47.8
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 3.7e-34 149.4 236 38.6
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 2.4e-33 146.7 241 32.4
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.4e-32 142.9 128 51.6
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 4.5e-32 142.5 197 42.1
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 1.4e-30 137.5 133 51.9
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 7.1e-30 135.2 167 45.5
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 3.5e-29 132.9 150 46.0
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 4.6e-29 132.5 133 51.9
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 1.5e-24 117.5 133 48.1
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 1.5e-19 100.9 97 54.6
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 9.4e-14 81.6 206 29.1
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 1.6e-13 80.9 120 30.8
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 3.9e-12 76.3 110 34.5
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.5e-11 73.6 113 32.7
Nn2g11894 Nelumbo nucifera HOM05D001060 ORTHO05D008097 5.0e-07 59.3 87 41.4
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 1.4e-06 57.8 75 40.0
Haze_09394 Corylus avellana HOM05D006561 ORTHO05D165302 1.9e-06 57.4 133 33.8
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 4.2e-06 56.2 78 39.7


User provided reference genes

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