Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1510.4 759 100.0
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1267.7 744 86.6
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 3.7e-284 981.5 746 66.2
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 8.5e-281 970.3 727 67.0
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 9.4e-280 966.8 712 67.3
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.5e-277 959.5 731 66.5
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.2e-271 939.9 721 64.5
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 2.8e-271 938.7 734 64.3
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 1.3e-268 929.9 703 65.7
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.2e-266 923.3 733 62.5
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 3.5e-266 921.8 711 64.6
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.3e-265 919.1 733 62.3
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 3.3e-264 915.2 702 64.5
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 2.1e-263 912.5 733 62.1
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 1.8e-262 909.4 733 62.5
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 3.4e-261 905.2 701 66.2
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 7.5e-261 904.0 768 59.6
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 7.0e-259 897.5 731 61.7
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 7.8e-258 894.0 708 62.0
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 7.8e-258 894.0 732 61.1
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 8.6e-257 890.6 710 63.4
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 8.6e-257 890.6 736 62.0
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 1.6e-255 886.3 751 61.1
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 1.6e-255 886.3 718 61.6
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.1e-255 885.9 749 61.3
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.8e-255 885.6 640 68.0
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 2.8e-255 885.6 729 62.0
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 3.6e-255 885.2 736 59.9
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 3.6e-255 885.2 751 61.7
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 8.0e-255 884.0 728 60.2
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-254 883.6 721 62.7
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 7.5e-253 877.5 776 58.9
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 1.7e-252 876.3 753 58.6
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.9e-252 875.5 747 61.0
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 1.1e-251 873.6 737 61.3
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 1.9e-251 872.8 731 60.2
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 3.2e-251 872.1 777 57.8
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 6.6e-249 864.4 702 62.4
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 8.6e-249 864.0 722 60.5
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 8.6e-249 864.0 699 61.9
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-248 863.6 715 62.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 3.6e-247 858.6 722 59.1
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 6.2e-247 857.8 730 58.6
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.4e-246 856.7 722 59.3
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 8.9e-246 854.0 777 57.4
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 5.8e-245 851.3 719 59.0
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 5.8e-245 851.3 735 58.8
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 8.3e-244 847.4 725 59.6
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 1.2e-242 843.6 720 59.3
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.2e-242 843.6 723 59.2
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 2.1e-242 842.8 734 58.3
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 6.0e-242 841.3 704 61.6
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.1e-240 837.0 722 58.9
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 1.5e-240 836.6 725 58.6
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 4.3e-240 835.1 764 56.4
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 4.3e-240 835.1 725 59.2
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 7.3e-240 834.3 708 60.0
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 2.1e-239 832.8 770 56.6
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 2.8e-239 832.4 738 57.7
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 3.6e-239 832.0 747 57.2
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 6.2e-239 831.2 708 59.9
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 6.2e-239 831.2 727 58.0
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.4e-238 830.1 706 59.6
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.9e-235 819.7 707 59.7
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 1.2e-234 817.0 710 58.2
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 5.1e-233 811.6 739 58.3
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.5e-232 810.1 719 57.0
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.2e-231 807.0 719 56.9
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 6.9e-230 801.2 720 56.8
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 2.2e-228 796.2 752 55.3
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 3.8e-228 795.4 772 54.1
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 1.2e-226 790.4 750 54.0
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 2.1e-226 789.6 751 54.9
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 7.8e-226 787.7 749 54.1
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 3.3e-224 782.3 707 55.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 5.6e-224 781.6 751 53.1
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 1.3e-223 780.4 777 53.4
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.6e-223 780.0 749 53.8
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.6e-223 780.0 711 55.1
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.0e-221 773.1 749 55.0
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 3.4e-221 772.3 751 53.7
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 7.6e-221 771.2 590 64.9
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 3.5e-218 762.3 711 54.7
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.6e-215 753.4 699 54.4
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 5.5e-211 738.4 744 52.6
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 2.7e-210 736.1 711 54.9
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 8.2e-207 724.5 706 52.3
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 3.0e-201 706.1 546 64.5
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.6e-199 700.3 540 65.9
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.8e-199 698.7 554 64.8
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.8e-199 698.7 554 64.8
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.1e-198 697.6 554 62.8
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 3.3e-184 649.4 696 50.1
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.1e-179 634.4 555 58.4
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 9.4e-179 631.3 662 49.5
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.6e-162 577.4 715 44.8
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 3.4e-160 569.7 689 44.0
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.1e-154 550.4 745 41.7
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 3.0e-153 546.6 642 44.2
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 1.2e-144 518.1 475 53.7
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 1.6e-141 507.7 480 55.8
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 6.6e-140 502.3 389 64.0
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.4e-128 463.4 459 54.5
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 4.9e-119 433.0 469 47.3
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 2.5e-115 420.6 330 65.5
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 7.6e-112 409.1 312 63.1
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 5.1e-108 396.4 747 34.3
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.6e-108 396.0 341 57.8
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 5.6e-107 392.9 649 36.7
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 8.1e-106 389.0 311 60.5
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 3.4e-104 383.6 715 35.1
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.6e-99 365.5 374 53.2
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 4.9e-87 326.6 278 61.5
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 4.5e-80 303.5 395 46.8
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.9e-76 290.4 412 40.0
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.7e-71 275.0 186 67.2
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 9.4e-70 269.2 380 43.4
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.3e-66 258.8 268 51.1
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 7.0e-65 253.1 304 44.1
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 1.2e-64 252.3 757 28.3
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.5e-64 251.9 350 41.7
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 6.1e-61 240.0 296 45.9
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.8e-50 204.5 144 65.3
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.8e-47 194.1 218 43.6
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.2e-46 189.9 196 50.5
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 4.7e-45 187.2 176 55.7
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.6e-35 154.8 211 39.8
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 1.0e-28 132.9 160 50.0
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.2e-27 129.4 192 41.1
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 3.4e-27 127.9 146 46.6
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 5.0e-23 114.0 115 49.6
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 7.3e-22 110.2 696 22.8
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.7e-21 107.5 127 45.7
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.8e-19 100.5 84 57.1
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.3e-18 99.4 84 56.0
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.9e-10 70.9 43 72.1
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 5.4e-09 67.4 92 40.2
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 3.5e-08 64.7 223 26.9
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 5.1e-07 60.8 36 72.2
Sc03g0004910 Simmondsia chinensis HOM05D036542 ORTHO05D387611 6.6e-07 60.5 55 63.6
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 8.6e-07 60.1 95 37.9


User provided reference genes

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