Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.7e-149 531.6 277 100.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 4.4e-102 375.2 309 68.3
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.9e-101 371.7 310 68.7
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.9e-101 371.7 310 68.7
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.4e-100 369.4 310 68.4
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 1.2e-99 367.1 310 66.8
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 4.6e-99 365.2 311 67.5
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.0e-98 364.0 308 66.6
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.5e-97 360.1 314 65.3
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.9e-97 359.8 313 64.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.9e-97 359.8 313 64.2
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.9e-97 359.8 313 64.2
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.3e-97 359.0 313 64.5
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 4.3e-97 358.6 317 63.4
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 9.6e-97 357.5 313 64.2
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.2e-96 357.1 310 64.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.2e-96 357.1 311 66.6
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.1e-95 354.0 311 64.3
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.4e-95 353.6 317 63.1
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.1e-95 352.4 314 63.4
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.0e-95 352.1 317 62.1
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 6.8e-95 351.3 311 63.0
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.5e-94 350.1 311 63.0
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 2.6e-94 349.4 310 66.1
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 2.6e-94 349.4 316 62.7
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 2.6e-94 349.4 315 64.4
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.6e-94 347.8 311 64.6
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 7.6e-94 347.8 312 63.8
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 7.6e-94 347.8 316 62.7
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 7.6e-94 347.8 309 64.7
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 9.9e-94 347.4 316 61.4
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.9e-93 345.9 310 63.2
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 3.8e-93 345.5 310 62.6
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 6.4e-93 344.7 311 65.3
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 1.9e-92 343.2 312 63.5
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.4e-92 342.8 314 65.0
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.2e-92 342.4 309 63.1
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.2e-91 340.5 316 61.1
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.6e-91 340.1 311 61.1
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.6e-91 340.1 311 61.1
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 6.0e-91 338.2 312 62.5
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 7.8e-91 337.8 349 56.7
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.0e-90 337.4 311 61.1
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.7e-90 336.7 314 62.1
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 1.7e-90 336.7 309 62.8
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.0e-90 335.9 311 64.0
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 3.0e-90 335.9 311 60.5
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 5.1e-90 335.1 309 62.5
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 5.1e-90 335.1 318 62.3
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 6.6e-90 334.7 312 61.5
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.1e-89 334.0 311 61.4
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.5e-89 333.6 310 62.6
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.5e-89 333.6 310 62.6
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 1.5e-89 333.6 310 60.6
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 1.9e-89 333.2 314 60.2
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.9e-89 333.2 310 61.0
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.9e-89 333.2 323 59.8
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 5.6e-89 331.6 311 61.1
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 7.3e-89 331.3 315 60.6
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 7.3e-89 331.3 311 61.1
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.3e-88 330.5 315 60.6
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.6e-88 330.1 309 60.2
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 3.6e-88 328.9 313 59.1
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 4.8e-88 328.6 324 58.3
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 4.8e-88 328.6 314 59.9
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 8.1e-88 327.8 318 60.4
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.4e-87 327.0 310 60.3
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.4e-87 326.2 312 59.0
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 3.1e-87 325.9 309 61.2
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 4.0e-87 325.5 346 56.9
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 6.9e-87 324.7 310 60.6
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 6.9e-87 324.7 318 60.7
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.5e-86 323.6 309 60.8
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 2.6e-86 322.8 309 59.5
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 2.6e-86 322.8 310 61.0
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 3.4e-86 322.4 309 59.9
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 2.2e-85 319.7 311 60.1
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 3.8e-85 318.9 309 59.5
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 3.8e-85 318.9 309 59.5
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 6.4e-85 318.2 319 59.6
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 6.4e-85 318.2 316 58.2
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 8.4e-85 317.8 309 59.9
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.4e-84 317.0 311 59.2
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 3.2e-84 315.8 268 67.2
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 3.2e-84 315.8 310 58.4
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 5.4e-84 315.1 309 58.3
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.2e-83 313.9 309 58.3
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.7e-83 312.8 309 58.6
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.7e-83 312.8 309 58.6
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.7e-83 312.8 309 58.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 6.0e-83 311.6 309 58.6
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 1.3e-82 310.5 309 57.9
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.7e-82 310.1 311 58.8
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.7e-82 310.1 311 58.2
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.3e-80 303.9 310 58.1
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 8.1e-80 301.2 311 57.2
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.3e-77 293.9 294 58.5
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.8e-77 292.4 224 71.4
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.9e-76 290.0 289 57.1
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.1e-75 286.6 333 54.1
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.3e-74 283.1 309 57.0
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.3e-74 283.1 346 50.9
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 3.0e-74 282.7 343 51.6
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 5.1e-74 282.0 270 61.5
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.5e-73 280.4 349 51.3
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.0e-69 267.7 265 60.8
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 2.9e-69 266.2 310 49.4
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.1e-68 264.2 199 71.9
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 7.9e-67 258.1 320 47.5
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.8e-66 256.9 299 52.5
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.3e-66 256.5 305 53.1
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.1e-65 254.2 198 68.7
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.5e-65 253.8 227 64.3
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.3e-65 252.3 270 54.8
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 5.9e-62 241.9 310 48.1
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 1.9e-60 236.9 185 69.7
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 8.7e-58 228.0 218 62.4
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 4.1e-55 219.2 309 45.3
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 9.4e-52 208.0 180 66.1
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.1e-51 206.8 175 69.1
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 3.1e-47 193.0 278 48.2
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 9.1e-47 191.4 113 88.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 2.2e-45 186.8 294 43.5
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.0e-42 177.9 382 37.2
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 1.8e-42 177.2 287 44.6
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.0e-37 159.1 237 47.3
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.1e-36 157.9 91 87.9
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 2.0e-33 147.1 92 84.8
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.6e-33 146.7 102 73.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.6e-33 146.7 102 73.5
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.5e-33 145.2 91 85.7
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.7e-32 142.9 120 66.7
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 7.7e-30 135.2 228 38.6
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 2.2e-29 133.7 221 40.7
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.2e-27 127.9 233 41.6
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 2.7e-27 126.7 167 50.3
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.7e-24 117.5 142 49.3
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 8.3e-24 115.2 198 42.4
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.0e-21 108.2 180 41.1
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 6.5e-21 105.5 94 62.8
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.2e-19 101.3 106 57.5
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.0e-18 96.7 82 62.2
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.4e-17 93.2 66 75.8
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.4e-15 87.8 230 33.9
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 6.6e-13 79.0 204 31.9
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 8.9e-10 68.6 41 73.2
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 2.2e-08 63.9 134 36.6
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.6e-06 57.8 87 39.1
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 2.0e-06 57.4 44 63.6
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 7.8e-06 55.5 57 59.6


User provided reference genes

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