Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 0.0e+00 2911.7 1464 100.0
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 2.1e-296 1023.1 1552 41.9
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 3.2e-292 1009.2 1413 43.9
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 1.1e-289 1000.7 1496 42.6
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 1.4e-287 993.8 1493 43.1
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 7.9e-283 978.0 1502 41.7
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 8.7e-274 948.0 1522 40.5
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 2.2e-269 933.3 1515 41.1
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 1.4e-258 897.5 1592 38.8
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 6.3e-256 888.6 1498 40.3
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 2.0e-241 840.5 1498 38.4
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 2.0e-241 840.5 1509 38.2
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 1.8e-239 833.9 1509 37.2
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.6e-235 819.7 1516 38.9
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 8.0e-235 818.5 1497 39.2
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 1.5e-233 814.3 1452 39.3
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 1.3e-232 811.2 1538 38.2
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.4e-231 807.7 1498 37.3
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 1.6e-230 804.3 1513 37.5
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 4.5e-230 802.7 1166 43.5
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 5.9e-230 802.4 1166 43.7
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.7e-229 800.8 1423 38.9
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 2.3e-226 790.4 1608 36.5
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.2e-225 788.1 1515 36.7
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 5.7e-225 785.8 1476 37.7
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 2.3e-221 773.9 1516 36.5
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 8.6e-221 771.9 1508 37.7
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 6.8e-218 762.3 1595 35.9
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.4e-217 760.0 1559 36.1
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 8.3e-216 755.4 1510 37.2
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 2.3e-210 737.3 1525 36.5
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 7.5e-209 732.3 1505 35.6
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 1.1e-207 728.4 1494 36.4
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 2.4e-207 727.2 1514 34.9
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 7.1e-207 725.7 1498 36.3
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 1.6e-206 724.5 1481 35.4
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 1.6e-203 714.5 1496 34.5
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 2.0e-201 707.6 1504 35.0
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 1.3e-200 704.9 1513 34.1
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 4.9e-200 703.0 1515 35.2
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 6.4e-200 702.6 1580 32.9
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 2.4e-199 700.7 1542 34.2
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 5.4e-199 699.5 1513 34.7
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.7e-198 697.2 1493 34.3
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 7.8e-198 695.7 1508 34.0
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 5.1e-197 693.0 1509 34.4
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 1.5e-196 691.4 1563 33.9
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 1.6e-195 688.0 1556 33.4
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 9.9e-193 678.7 1465 35.2
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 1.3e-192 678.3 1509 34.6
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 1.7e-192 677.9 1475 33.8
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 3.8e-192 676.8 1507 35.8
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 6.4e-192 676.0 1483 35.3
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 4.3e-188 663.3 1476 34.1
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 6.4e-184 649.4 1490 33.4
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 6.0e-182 642.9 1520 33.4
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 6.7e-181 639.4 1485 33.4
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 2.5e-180 637.5 1487 34.4
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 5.6e-180 636.3 1483 33.6
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 4.8e-179 633.3 1470 34.4
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 3.4e-177 627.1 1490 33.2
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 3.4e-177 627.1 1494 33.1
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 4.5e-177 626.7 1454 35.6
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 2.9e-176 624.0 1512 32.4
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 8.4e-176 622.5 1584 32.2
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 8.4e-176 622.5 809 46.1
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 3.9e-173 613.6 1553 32.3
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 9.0e-170 602.4 1473 34.4
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.5e-169 600.1 1487 33.6
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.5e-168 596.3 1473 34.5
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 1.6e-166 591.7 1478 32.7
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.0e-165 587.4 1493 33.6
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.3e-164 583.9 1111 36.4
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.8e-163 580.1 1445 32.9
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 9.0e-162 575.9 1491 32.5
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 2.7e-158 564.3 1460 32.3
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 6.1e-158 563.1 780 46.9
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 5.7e-156 556.6 737 47.2
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 4.8e-155 553.5 1524 31.9
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 4.8e-155 553.5 1524 31.9
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 2.0e-140 505.0 674 47.8
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 3.7e-139 500.7 1479 30.0
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.1e-135 489.2 999 36.1
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 1.8e-130 471.9 1460 29.4
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 2.7e-129 468.0 1474 29.0
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 1.0e-128 466.1 1483 29.5
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 1.3e-128 465.7 1459 29.3
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 2.2e-123 448.4 1602 27.6
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.1e-122 446.0 1054 34.4
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 7.0e-122 443.4 892 35.5
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 3.6e-118 431.0 1495 28.4
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 5.4e-114 417.2 674 42.1
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 7.8e-113 413.3 761 38.8
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 2.3e-112 411.8 657 42.9
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 1.0e-109 402.9 678 40.9
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 4.0e-109 401.0 657 42.6
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 1.5e-108 399.1 692 37.7
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 6.4e-107 393.7 745 38.1
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 2.2e-99 368.6 647 35.9
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 3.1e-93 348.2 809 33.4
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 8.6e-88 330.1 713 34.6
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 6.6e-80 303.9 500 41.2
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.1e-71 276.6 515 40.4
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 5.5e-58 231.1 597 33.0
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.4e-53 216.5 590 34.1
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 4.5e-52 211.5 215 51.6
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 1.7e-51 209.5 721 27.3
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.3e-46 193.4 170 61.8
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 1.7e-38 166.4 233 38.2
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 5.7e-31 141.4 235 34.5
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 8.2e-30 137.5 234 35.0
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.8e-29 136.3 280 35.0
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 2.9e-27 129.0 114 52.6
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 3.8e-27 128.6 295 30.5
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 3.5e-20 105.5 202 36.1
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 7.0e-13 81.3 137 36.5
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 1.9e-10 73.2 138 31.2
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 2.0e-07 63.2 146 29.5


User provided reference genes

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