Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 0.0e+00 1239.9 645 100.0
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 8.2e-208 727.6 566 65.9
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 5.9e-206 721.5 647 60.9
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 1.7e-200 703.4 600 62.7
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 9.1e-199 697.6 605 61.8
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 2.5e-196 689.5 579 63.6
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 1.7e-192 676.8 564 61.2
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 6.5e-189 664.8 651 56.4
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 1.0e-186 657.5 625 56.8
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 1.4e-186 657.1 625 56.8
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 8.8e-186 654.4 658 54.1
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 3.3e-185 652.5 633 57.0
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 1.3e-184 650.6 645 56.3
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 2.7e-182 642.9 638 55.6
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 3.5e-182 642.5 585 57.1
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 7.2e-180 634.8 652 54.3
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 6.1e-179 631.7 599 56.3
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 5.2e-178 628.6 570 58.2
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 6.8e-178 628.2 656 53.5
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 7.5e-177 624.8 588 57.3
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 9.8e-177 624.4 588 57.3
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 1.4e-175 620.5 568 58.1
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 3.1e-175 619.4 685 51.7
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 2.0e-174 616.7 657 51.8
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 4.5e-174 615.5 627 54.5
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 7.7e-174 614.8 604 55.0
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 5.0e-173 612.1 648 52.6
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.5e-172 610.5 526 60.8
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 1.5e-172 610.5 650 50.2
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 9.5e-172 607.8 587 54.9
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 4.7e-171 605.5 657 53.1
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 8.0e-171 604.7 587 55.4
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 1.4e-170 604.0 647 52.9
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 6.8e-170 601.7 639 50.9
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 5.7e-169 598.6 663 51.4
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 1.2e-166 590.9 610 53.0
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 4.5e-166 589.0 568 54.4
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 7.8e-166 588.2 633 51.0
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 2.9e-165 586.3 606 51.5
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 5.0e-165 585.5 618 51.0
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 8.6e-165 584.7 568 54.2
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 9.5e-164 581.3 651 50.1
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 1.2e-163 580.9 606 51.7
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 2.1e-163 580.1 599 52.1
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 3.6e-163 579.3 643 50.2
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 4.7e-163 578.9 638 49.5
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 6.1e-163 578.6 655 50.2
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 1.4e-162 577.4 641 50.4
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 1.4e-162 577.4 648 50.0
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 2.3e-162 576.6 536 56.5
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 3.0e-162 576.2 646 50.9
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 4.0e-162 575.9 651 49.3
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 5.2e-162 575.5 638 50.6
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 1.5e-161 573.9 618 49.8
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 1.5e-161 573.9 599 51.6
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 3.4e-161 572.8 597 51.3
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 4.4e-161 572.4 622 51.9
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 9.8e-161 571.2 611 49.4
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 1.3e-160 570.9 619 49.9
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 2.2e-160 570.1 785 44.6
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 2.9e-160 569.7 484 59.5
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 4.9e-160 568.9 599 51.3
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 6.4e-160 568.5 638 49.5
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 8.3e-160 568.2 600 51.5
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.1e-159 567.8 660 51.4
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 1.1e-159 567.8 638 49.1
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 1.1e-159 567.8 633 50.1
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.4e-159 567.4 648 49.7
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 2.4e-159 566.6 600 50.2
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 9.2e-159 564.7 602 51.0
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 4.6e-158 562.4 638 48.7
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 5.9e-158 562.0 640 48.6
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 7.8e-158 561.6 652 48.6
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 1.0e-157 561.2 638 48.7
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 3.9e-157 559.3 632 50.0
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.1e-156 557.8 648 48.9
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.3e-156 556.2 670 47.8
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 7.3e-156 555.1 648 48.9
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 1.4e-154 550.8 648 48.1
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 2.3e-154 550.1 616 48.1
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.1e-154 549.7 636 48.9
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 3.1e-154 549.7 651 48.2
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 6.8e-154 548.5 575 49.9
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 2.0e-153 547.0 613 48.3
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 5.8e-153 545.4 617 48.0
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 7.5e-153 545.0 617 48.0
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 1.9e-151 540.4 604 48.7
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 3.2e-151 539.7 640 47.5
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 7.0e-151 538.5 647 47.6
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 4.6e-150 535.8 641 47.0
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 1.0e-149 534.6 646 49.5
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 2.1e-142 510.4 597 47.6
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 1.3e-141 507.7 646 45.7
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 8.6e-141 505.0 580 48.1
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 1.6e-139 500.7 646 46.0
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 8.4e-128 461.8 526 46.0
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 1.1e-127 461.5 603 42.8
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.5e-121 439.5 599 44.2
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.4e-106 390.6 366 56.8
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.5e-105 387.9 587 41.7
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 1.3e-91 341.7 426 46.9
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 1.9e-87 327.8 326 55.2
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 7.9e-86 322.4 657 35.3
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 8.8e-85 318.9 613 36.1
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 2.6e-81 307.4 543 35.5
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 4.5e-81 306.6 503 36.4
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 2.1e-70 271.2 536 34.3
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 3.6e-70 270.4 540 35.7
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 6.8e-53 213.0 269 43.5
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 7.3e-47 193.0 531 29.8
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.7e-43 181.8 321 36.1
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 9.2e-42 176.0 593 27.7
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 6.4e-35 153.3 134 57.5
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 3.9e-32 144.1 115 59.1
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 1.5e-31 142.1 404 26.7
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.5e-28 132.1 173 42.8
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 3.4e-28 131.0 331 33.5
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 3.9e-24 117.5 179 42.5
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 2.1e-22 111.7 535 22.8
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 1.1e-21 109.4 437 22.7
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.7e-19 102.1 144 44.4
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 7.3e-15 86.7 134 36.6
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 2.8e-14 84.7 94 45.7
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 2.6e-12 78.2 75 50.7
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 3.4e-12 77.8 167 32.3
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.1e-09 68.6 66 48.5


User provided reference genes

Program Settings