Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005890 Simmondsia chinensis HOM05D005494 ORTHO05D006689 7.2e-113 410.6 209 100.0
Sc12g0005880 Simmondsia chinensis HOM05D005494 ORTHO05D006689 4.5e-83 311.6 166 95.8
Hund09389 Selenicereus undatus HOM05D005494 ORTHO05D006689 8.6e-74 280.8 190 74.7
CSS0010415 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 1.1e-68 263.8 193 67.9
CSS0047784 Camellia sinensis var. sinensis HOM05D005494 ORTHO05D006689 1.1e-68 263.8 193 67.9
Dinv07986 Davidia involucrata HOM05D005494 ORTHO05D006689 1.4e-68 263.5 194 67.5
EL10Ac5g10874 Beta vulgaris HOM05D005494 ORTHO05D006689 2.4e-68 262.7 216 64.4
AUR62008313 Chenopodium quinoa HOM05D005494 ORTHO05D006689 2.4e-68 262.7 192 68.8
GSVIVG01008098001 Vitis vinifera HOM05D005494 ORTHO05D006689 2.4e-68 262.7 191 68.6
Haze_07413 Corylus avellana HOM05D005494 ORTHO05D006689 5.4e-68 261.5 194 68.6
AUR62021784 Chenopodium quinoa HOM05D005494 ORTHO05D006689 7.0e-68 261.2 188 70.2
QL10p014050 Quercus lobata HOM05D005494 ORTHO05D006689 7.0e-68 261.2 193 67.9
Prupe.5G182300 Prunus persica HOM05D005494 ORTHO05D006689 9.2e-68 260.8 194 68.6
AUR62022932 Chenopodium quinoa HOM05D005494 ORTHO05D006689 1.2e-67 260.4 191 68.6
Hma1.2p1_0572F.1_g181100 Hydrangea macrophylla HOM05D005494 ORTHO05D006689 2.7e-67 259.2 193 67.9
Dinv13115 Davidia involucrata HOM05D005494 ORTHO05D006689 4.6e-67 258.5 194 67.0
Ciclev10020622m.g Citrus clementina HOM05D005494 ORTHO05D006689 6.0e-67 258.1 194 68.6
Manes.14G072100 Manihot esculenta HOM05D005494 ORTHO05D006689 6.0e-67 258.1 196 68.4
Cfa019036 Carpinus fangiana HOM05D005494 ORTHO05D006689 1.0e-66 257.3 194 67.0
TWI09G1329 Tripterygium wilfordii HOM05D005494 ORTHO05D006689 1.3e-66 256.9 194 68.0
CiPaw.11G034500 Carya illinoinensis HOM05D005494 ORTHO05D006689 3.9e-66 255.4 193 66.3
Cc04_g16070 Coffea canephora HOM05D005494 ORTHO05D006689 3.9e-66 255.4 191 66.0
Actinidia04945 Actinidia chinensis HOM05D005494 ORTHO05D006689 6.6e-66 254.6 191 66.0
CsaV3_1G008090 Cucumis sativus L. HOM05D005494 ORTHO05D006689 6.6e-66 254.6 194 66.0
COL.COLO4_07634 Corchorus olitorius HOM05D005494 ORTHO05D006689 8.6e-66 254.2 193 68.4
Oeu038311.1 Olea europaea HOM05D005494 ORTHO05D006689 2.5e-65 252.7 190 65.3
Potri.012G073500 Populus trichocarpa HOM05D005494 ORTHO05D006689 2.5e-65 252.7 194 67.0
Atru.chr9.2369 Acer truncatum HOM05D005494 ORTHO05D006689 3.3e-65 252.3 194 67.0
Duzib084G0032 Durio zibethinus HOM05D005494 ORTHO05D006689 4.3e-65 251.9 194 67.5
RcHm_v2.0_Chr7g0180051 Rosa chinensis HOM05D005494 ORTHO05D006689 5.6e-65 251.5 194 67.0
ClCG01G014230 Citrullus lanatus HOM05D005494 ORTHO05D006689 7.3e-65 251.1 194 64.9
Sed0009281 Sechium edule HOM05D005494 ORTHO05D006689 7.3e-65 251.1 194 64.9
MD14G1189700 Malus domestica HOM05D005494 ORTHO05D006689 9.5e-65 250.8 194 66.5
vmacro19338 Vaccinium macrocarpon HOM05D005494 ORTHO05D006689 1.2e-64 250.4 191 66.5
CAN.G999.3 Capsicum annuum HOM05D005494 ORTHO05D006689 2.1e-64 249.6 190 65.8
Thecc.10G120900 Theobroma cacao HOM05D005494 ORTHO05D006689 2.8e-64 249.2 195 67.2
MD06G1183600 Malus domestica HOM05D005494 ORTHO05D006689 3.6e-64 248.8 194 66.0
MD14G1057100 Malus domestica HOM05D005494 ORTHO05D006689 3.6e-64 248.8 194 66.0
CANSAT80G2452 Cannabis sativa HOM05D005494 ORTHO05D006689 4.7e-64 248.4 194 64.9
Eucgr.B00382 Eucalyptus grandis HOM05D005494 ORTHO05D006689 8.0e-64 247.7 194 65.5
Lalb_Chr08g0236101 Lupinus albus HOM05D005494 ORTHO05D006689 2.3e-63 246.1 194 64.4
PGSC0003DMG400024571 Solanum tuberosum HOM05D005494 ORTHO05D006689 2.3e-63 246.1 190 65.3
Gorai.008G189500 Gossypium raimondii HOM05D005494 ORTHO05D006689 3.1e-63 245.7 190 66.3
Gohir.D12G177100 Gossypium hirsutum HOM05D005494 ORTHO05D006689 4.0e-63 245.4 190 65.8
Sopen03g032650 Solanum pennellii HOM05D005494 ORTHO05D006689 6.8e-63 244.6 190 65.3
FAN04G1682 Fragaria x ananassa HOM05D005494 ORTHO05D006689 8.9e-63 244.2 194 65.5
Solyc03g113610.4 Solanum lycopersicum HOM05D005494 ORTHO05D006689 8.9e-63 244.2 190 64.7
arahy.Tifrunner.gnm1.ann1.Y2W2NU Arachis hypogaea HOM05D005494 ORTHO05D006689 2.0e-62 243.0 193 64.2
MSTRG.9655 Avicennia marina HOM05D005494 ORTHO05D006689 2.0e-62 243.0 190 66.3
DCAR_026093 Daucus carota HOM05D005494 ORTHO05D006689 2.6e-62 242.7 194 62.4
Peaxi162Scf00017g02118 Petunia axillaris HOM05D005494 ORTHO05D006689 2.6e-62 242.7 191 63.4
PSO832G2211 Papaver somniferum HOM05D005494 ORTHO05D006689 3.4e-62 242.3 195 64.1
Gohir.A12G174400 Gossypium hirsutum HOM05D005494 ORTHO05D006689 4.4e-62 241.9 190 65.8
Glyma.04G177200 Glycine max HOM05D005494 ORTHO05D006689 5.8e-62 241.5 190 64.2
VMungo0464G1007 Vigna mungo HOM05D005494 ORTHO05D006689 5.8e-62 241.5 194 63.4
Phvul.004G010600 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 1.7e-61 240.0 194 62.9
Glyma.05G004700 Glycine max HOM05D005494 ORTHO05D006689 2.9e-61 239.2 193 62.2
SGA_v2.0_scaffold7G04099 Striga asiatica HOM05D005494 ORTHO05D006689 4.9e-61 238.4 190 62.6
FAN13G0712 Fragaria x ananassa HOM05D005494 ORTHO05D006689 8.3e-61 237.7 208 61.1
FAN18G0952 Fragaria x ananassa HOM05D005494 ORTHO05D006689 8.3e-61 237.7 190 65.3
Lj1g0011553 Lotus japonicus HOM05D005494 ORTHO05D006689 8.3e-61 237.7 194 63.4
PSO591G0251 Papaver somniferum HOM05D005494 ORTHO05D006689 1.1e-60 237.3 195 62.6
Cpa.g.sc30.67 Carica papaya HOM05D005494 ORTHO05D006689 1.4e-60 236.9 188 63.3
Lj4g0024662 Lotus japonicus HOM05D005494 ORTHO05D006689 2.4e-60 236.1 194 62.9
Lalb_Chr07g0182421 Lupinus albus HOM05D005494 ORTHO05D006689 2.1e-59 233.0 190 60.5
Oeu038310.1 Olea europaea HOM05D005494 ORTHO05D006689 3.5e-59 232.3 190 61.1
Ca_18065_v3 Cicer arietinum L. HOM05D005494 ORTHO05D006689 4.6e-59 231.9 190 61.1
Sabra12G0052300 Salix brachista HOM05D005494 ORTHO05D006689 1.0e-58 230.7 176 68.2
Nn3g17064 Nelumbo nucifera HOM05D005494 ORTHO05D006689 2.3e-58 229.6 195 61.0
Psat7g041440 Pisum sativum HOM05D005494 ORTHO05D006689 2.3e-58 229.6 194 61.3
Nitab4.5_0000642g0180 Nicotiana tabacum HOM05D005494 ORTHO05D006689 3.3e-57 225.7 177 65.5
Rhsim08G0163400 Rhododendron simsii HOM05D005494 ORTHO05D006689 7.3e-57 224.6 177 65.5
arahy.Tifrunner.gnm1.ann1.QI1X69 Arachis hypogaea HOM05D005494 ORTHO05D006689 9.5e-57 224.2 185 62.2
HanXRQChr02g0045331 Helianthus annuus HOM05D005494 ORTHO05D006689 1.6e-56 223.4 191 56.5
FAN08G3169 Fragaria x ananassa HOM05D005494 ORTHO05D006689 2.1e-56 223.0 177 65.0
Oeu039559.2 Olea europaea HOM05D005494 ORTHO05D006689 4.7e-56 221.9 175 62.9
Migut.N01938 Erythranthe guttata HOM05D005494 ORTHO05D006689 8.1e-56 221.1 192 58.9
TAR629G2056 Trochodendron aralioides HOM05D005494 ORTHO05D006689 1.1e-55 220.7 182 62.1
HanXRQChr16g0516751 Helianthus annuus HOM05D005494 ORTHO05D006689 4.0e-55 218.8 192 56.2
Aa31LG3G16120 Aethionema arabicum HOM05D005494 ORTHO05D006689 2.0e-54 216.5 190 56.8
TPR.G17080 Trifolium pratense HOM05D005494 ORTHO05D006689 2.6e-54 216.1 202 57.4
Aqoxy3G03184 Aquilegia oxysepala HOM05D005494 ORTHO05D006689 4.4e-54 215.3 194 57.2
Nitab4.5_0009486g0030 Nicotiana tabacum HOM05D005494 ORTHO05D006689 4.4e-54 215.3 176 62.5
unitig_8.g3614 Utricularia gibba HOM05D005494 ORTHO05D006689 7.5e-54 214.5 191 58.1
THA.LOC104814121 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 9.9e-54 214.2 194 59.8
MELO3C002226.2 Cucumis melo HOM05D005494 ORTHO05D006689 2.9e-53 212.6 194 59.8
TAR622G0530 Trochodendron aralioides HOM05D005494 ORTHO05D006689 4.9e-53 211.8 187 57.8
AT5G11010 Arabidopsis thaliana HOM05D005494 ORTHO05D006689 1.1e-52 210.7 189 56.6
CARHR202280 Cardamine hirsuta HOM05D005494 ORTHO05D006689 1.9e-52 209.9 193 58.5
Lsat_1_v5_gn_1_11340 Lactuca sativa HOM05D005494 ORTHO05D006689 2.4e-52 209.5 195 54.4
AL6G21610 Arabidopsis lyrata HOM05D005494 ORTHO05D006689 4.1e-52 208.8 189 56.1
Carub.0006s0951 Capsella rubella HOM05D005494 ORTHO05D006689 4.1e-52 208.8 189 56.1
ECA247G2071 Erigeron canadensis HOM05D005494 ORTHO05D006689 1.2e-51 207.2 193 53.9
THA.LOC104818279 Tarenaya hassleriana HOM05D005494 ORTHO05D006689 1.6e-51 206.8 194 57.7
Sp6g32480 Schrenkiella parvula HOM05D005494 ORTHO05D006689 4.6e-51 205.3 189 57.1
Thhalv10000203m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 1.0e-50 204.1 189 56.1
Migut.D01889 Erythranthe guttata HOM05D005494 ORTHO05D006689 3.9e-50 202.2 192 55.2
Zm00001eb121920 Zea mays HOM05D005494 ORTHO05D006689 3.9e-50 202.2 193 53.9
Os01g0184000 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 1.5e-49 200.3 193 52.8
HPP92_008786 Vanilla planifolia HOM05D005494 ORTHO05D006689 3.3e-49 199.1 194 55.7
Glyma.19G005300 Glycine max HOM05D005494 ORTHO05D006689 2.1e-48 196.4 153 62.1
SHI07761 Sapria himalayana HOM05D005494 ORTHO05D006689 8.1e-48 194.5 175 61.1
SEGI_00948 Sequoiadendron giganteum HOM05D005494 ORTHO05D006689 1.5e-46 190.3 193 50.8
AUR62012293 Chenopodium quinoa HOM05D005494 ORTHO05D006689 2.6e-46 189.5 191 55.5
GSVIVG01008100001 Vitis vinifera HOM05D005494 ORTHO05D006689 3.4e-46 189.1 139 66.2
Psat7g079600 Pisum sativum HOM05D005494 ORTHO05D006689 4.4e-46 188.7 177 55.9
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 4.9e-45 185.3 176 55.7
BcaC04g19267 Brassica carinata HOM05D005494 ORTHO05D006689 8.4e-45 184.5 192 52.1
A10p26670 Brassica napus HOM05D005494 ORTHO05D006689 1.4e-44 183.7 192 51.6
C09p65840 Brassica napus HOM05D005494 ORTHO05D006689 1.4e-44 183.7 192 51.6
Medtr8g080140 Medicago truncatula HOM05D005494 ORTHO05D006689 1.9e-44 183.3 195 51.3
CDE02G1640 Ceratophyllum demersum HOM05D005494 ORTHO05D006689 2.4e-44 183.0 184 53.3
Phvul.009G054101 Phaseolus vulgaris HOM05D005494 ORTHO05D006689 8.7e-42 174.5 138 62.3
Duzib205G0238 Durio zibethinus HOM05D005494 ORTHO05D006689 4.3e-41 172.2 177 55.9
FvH4_5g16020 Fragaria vesca HOM05D005494 ORTHO05D006689 6.2e-40 168.3 134 63.4
BolC9t59405H Brassica oleracea HOM05D005494 ORTHO05D006689 8.1e-40 167.9 164 53.0
Medtr8g080150 Medicago truncatula HOM05D005494 ORTHO05D006689 1.1e-39 167.5 176 51.7
Lj5C118G23 Lonicera japonica HOM05D005494 ORTHO05D006689 6.9e-39 164.9 133 61.7
Lsat_1_v5_gn_5_17360 Lactuca sativa HOM05D005494 ORTHO05D006689 9.0e-39 164.5 179 50.3
Aa31LG10G14040 Aethionema arabicum HOM05D005494 ORTHO05D006689 8.4e-37 157.9 167 50.3
Os01g0354700 Oryza sativa ssp. japonica HOM05D005494 ORTHO05D006689 1.3e-29 134.0 182 40.1
Mapoly0002s0051 Marchantia polymorpha HOM05D005494 ORTHO05D006689 2.9e-29 132.9 198 39.4
HPP92_006463 Vanilla planifolia HOM05D005494 ORTHO05D006689 3.2e-28 129.4 179 42.5
Pp3c4_400 Physcomitrium patens HOM05D005494 ORTHO05D006689 2.3e-26 123.2 201 35.3
VMungo1309G1734 Vigna mungo HOM05D005494 ORTHO05D006689 4.3e-17 92.4 73 57.5
MBI06_g04707_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006689 2.4e-15 86.7 73 61.6
Thhalv10015920m.g Eutrema salsugineum HOM05D005494 ORTHO05D006689 1.2e-14 84.3 126 42.9
Lj5A118T79 Lonicera japonica HOM05D005494 ORTHO05D006689 9.7e-09 64.7 44 75.0


User provided reference genes

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