Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005830 Simmondsia chinensis HOM05D003658 ORTHO05D004457 7.5e-59 230.3 118 100.0
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 2.0e-43 179.1 132 74.2
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 3.2e-41 171.8 132 71.2
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 3.9e-39 164.9 188 54.3
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 4.7e-37 157.9 188 51.6
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 6.2e-37 157.5 189 51.3
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 8.1e-37 157.1 187 51.9
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 8.1e-37 157.1 189 51.9
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 8.1e-37 157.1 189 51.3
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 8.1e-37 157.1 189 51.3
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.1e-36 156.8 189 51.9
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.1e-36 156.8 189 51.9
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 1.4e-36 156.4 189 51.3
CAN.G1001.10 Capsicum annuum HOM05D003658 ORTHO05D004457 1.8e-36 156.0 187 51.9
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 2.3e-36 155.6 187 51.3
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 2.3e-36 155.6 189 50.8
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.3e-36 155.6 183 52.5
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 3.1e-36 155.2 187 51.9
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 3.1e-36 155.2 189 50.8
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 4.0e-36 154.8 187 51.3
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 4.0e-36 154.8 188 51.1
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 4.0e-36 154.8 187 51.9
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 4.0e-36 154.8 187 51.9
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 5.2e-36 154.5 189 49.7
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 5.2e-36 154.5 188 51.1
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 5.2e-36 154.5 187 51.3
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 5.2e-36 154.5 189 50.3
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 6.8e-36 154.1 189 49.7
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 6.8e-36 154.1 187 51.3
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 6.8e-36 154.1 189 49.7
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 6.8e-36 154.1 189 50.3
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 6.8e-36 154.1 189 50.3
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 6.8e-36 154.1 189 50.3
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 6.8e-36 154.1 187 51.3
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 8.9e-36 153.7 187 51.3
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 8.9e-36 153.7 189 50.3
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 8.9e-36 153.7 189 50.3
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 8.9e-36 153.7 188 49.5
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 1.2e-35 153.3 189 50.3
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 1.2e-35 153.3 189 50.3
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 1.2e-35 153.3 189 49.7
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 1.2e-35 153.3 189 50.3
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 1.2e-35 153.3 189 48.7
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.2e-35 153.3 189 49.7
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.5e-35 152.9 189 49.7
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.5e-35 152.9 189 49.7
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 1.5e-35 152.9 189 49.7
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 1.5e-35 152.9 187 50.8
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 1.5e-35 152.9 189 49.7
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 1.5e-35 152.9 189 49.7
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 1.5e-35 152.9 189 49.7
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.5e-35 152.9 189 49.7
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 2.0e-35 152.5 187 50.8
Actinidia07110 Actinidia chinensis HOM05D003658 ORTHO05D004457 2.0e-35 152.5 189 50.3
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 2.0e-35 152.5 189 49.2
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 2.0e-35 152.5 189 50.3
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 2.0e-35 152.5 187 50.3
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 2.0e-35 152.5 189 49.7
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 2.0e-35 152.5 187 51.3
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.6e-35 152.1 189 49.7
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.6e-35 152.1 189 49.7
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 2.6e-35 152.1 187 50.3
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 2.6e-35 152.1 189 49.7
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 2.6e-35 152.1 189 49.2
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 3.4e-35 151.8 189 49.2
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 3.4e-35 151.8 187 49.7
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 3.4e-35 151.8 189 50.3
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 4.4e-35 151.4 189 49.2
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 4.4e-35 151.4 187 50.3
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 4.4e-35 151.4 189 49.2
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 4.4e-35 151.4 189 49.7
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 4.4e-35 151.4 189 49.7
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 4.4e-35 151.4 189 49.7
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 4.4e-35 151.4 188 49.5
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 4.4e-35 151.4 189 49.7
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 4.4e-35 151.4 187 49.7
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 5.8e-35 151.0 189 49.2
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 5.8e-35 151.0 189 49.2
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 5.8e-35 151.0 187 49.7
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 5.8e-35 151.0 189 49.7
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 5.8e-35 151.0 188 49.5
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 5.8e-35 151.0 189 48.7
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 5.8e-35 151.0 187 50.8
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 5.8e-35 151.0 189 49.2
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 5.8e-35 151.0 187 49.2
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 7.6e-35 150.6 187 49.2
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 7.6e-35 150.6 187 49.7
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 9.9e-35 150.2 190 50.0
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 1.3e-34 149.8 188 49.5
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 1.3e-34 149.8 187 48.7
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 1.3e-34 149.8 187 49.7
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 1.3e-34 149.8 189 48.7
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 1.7e-34 149.4 187 48.7
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 1.7e-34 149.4 187 48.7
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 1.7e-34 149.4 187 48.7
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 1.7e-34 149.4 187 48.7
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 1.7e-34 149.4 187 48.7
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 1.7e-34 149.4 189 48.1
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 2.2e-34 149.1 188 48.9
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 2.2e-34 149.1 187 49.7
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 2.2e-34 149.1 189 48.7
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 2.9e-34 148.7 187 48.7
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 2.9e-34 148.7 189 48.7
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 2.9e-34 148.7 189 48.7
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 3.8e-34 148.3 187 48.1
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 3.8e-34 148.3 187 48.7
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 3.8e-34 148.3 189 48.1
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 3.8e-34 148.3 189 48.7
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 3.8e-34 148.3 187 48.1
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 4.9e-34 147.9 187 48.1
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 4.9e-34 147.9 187 48.7
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 4.9e-34 147.9 190 49.5
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 6.4e-34 147.5 188 47.3
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 1.1e-33 146.7 187 48.1
Cfa011369 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.4e-33 146.4 189 48.1
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 1.4e-33 146.4 189 47.6
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 2.4e-33 145.6 189 48.7
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 3.2e-33 145.2 189 47.1
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 3.2e-33 145.2 189 47.1
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 3.2e-33 145.2 187 47.1
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 4.1e-33 144.8 189 46.0
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 9.2e-33 143.7 189 46.6
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 1.6e-32 142.9 189 47.1
Zm00001eb440860 Zea mays HOM05D003658 ORTHO05D004457 1.6e-32 142.9 189 47.1
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 2.7e-32 142.1 189 47.6
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 3.5e-32 141.7 189 46.0
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 6.0e-32 141.0 189 47.6
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 6.0e-32 141.0 189 46.6
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 1.3e-31 139.8 189 47.1
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 1.3e-31 139.8 189 47.6
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 6.2e-29 131.0 182 45.6
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 6.2e-29 131.0 186 44.1
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 3.8e-26 121.7 189 42.3
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 6.4e-26 120.9 187 41.2
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 1.4e-25 119.8 173 44.5
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 4.8e-21 104.8 59 91.5
Haze_26994 Corylus avellana HOM05D003658 ORTHO05D004457 1.5e-19 99.8 176 39.2
Glyma.20G148821 Glycine max HOM05D003658 ORTHO05D004457 1.9e-17 92.8 170 37.1
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 9.3e-17 90.5 66 69.7
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 3.5e-16 88.6 50 86.0
Aqoxy84s009 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 1.8e-15 86.3 57 70.2
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 3.0e-15 85.5 121 45.5
Dinv14502 Davidia involucrata HOM05D003658 ORTHO05D004457 5.1e-15 84.7 52 78.8
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.1e-14 83.6 185 31.9
ATR0609G052 Amborella trichopoda HOM05D003658 ORTHO05D004457 5.6e-14 81.3 46 87.0
CAN.G916.7 Capsicum annuum HOM05D003658 ORTHO05D003835 2.1e-13 79.3 46 87.0
TAR633G0489 Trochodendron aralioides HOM05D003658 ORTHO05D004457 2.8e-13 79.0 52 73.1
MD12G1166200 Malus domestica HOM05D003658 ORTHO05D004457 2.4e-12 75.9 52 67.3
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 4.9e-10 68.2 67 50.7
CAN.G185.26 Capsicum annuum HOM05D000875 ORTHO05D000684 5.5e-09 64.7 47 70.2
Cfa022738 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.2e-08 63.5 67 44.8


User provided reference genes

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