Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0005820 Simmondsia chinensis HOM05D003658 ORTHO05D004457 6.6e-78 293.9 140 100.0
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 7.0e-64 247.3 133 85.7
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 2.4e-56 222.2 133 78.2
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 2.4e-56 222.2 133 78.2
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 1.6e-55 219.5 134 75.4
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 7.8e-55 217.2 134 73.9
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 7.8e-55 217.2 134 74.6
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 7.8e-55 217.2 134 74.6
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 7.8e-55 217.2 134 74.6
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 7.8e-55 217.2 134 74.6
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.0e-54 216.9 133 74.4
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 1.0e-54 216.9 134 73.1
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 1.3e-54 216.5 133 75.2
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 1.3e-54 216.5 133 74.4
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 5.1e-54 214.5 133 75.9
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 5.1e-54 214.5 134 73.1
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 5.1e-54 214.5 133 72.9
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 5.1e-54 214.5 133 73.7
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 6.6e-54 214.2 133 73.7
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 6.6e-54 214.2 133 72.2
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 8.6e-54 213.8 131 74.8
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 8.6e-54 213.8 133 73.7
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 1.5e-53 213.0 133 72.2
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 2.5e-53 212.2 133 72.2
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 3.3e-53 211.8 133 73.7
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 3.3e-53 211.8 133 72.2
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 4.3e-53 211.5 133 72.2
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 4.3e-53 211.5 134 72.4
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 4.3e-53 211.5 129 76.0
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 5.6e-53 211.1 133 70.7
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 5.6e-53 211.1 133 70.7
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 5.6e-53 211.1 133 71.4
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 7.3e-53 210.7 133 70.7
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 7.3e-53 210.7 133 70.7
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 7.3e-53 210.7 130 74.6
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 7.3e-53 210.7 133 70.7
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 7.3e-53 210.7 133 74.4
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 9.5e-53 210.3 133 71.4
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 9.5e-53 210.3 133 70.7
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 9.5e-53 210.3 133 72.9
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 1.6e-52 209.5 130 73.1
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 1.6e-52 209.5 134 70.9
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 2.1e-52 209.1 129 75.2
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 2.1e-52 209.1 133 70.7
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 2.1e-52 209.1 133 71.4
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 2.8e-52 208.8 133 71.4
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 2.8e-52 208.8 133 70.7
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 3.6e-52 208.4 133 71.4
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 3.6e-52 208.4 133 70.7
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 3.6e-52 208.4 133 71.4
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 4.7e-52 208.0 133 71.4
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 4.7e-52 208.0 129 74.4
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 4.7e-52 208.0 133 69.2
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 4.7e-52 208.0 127 75.6
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 4.7e-52 208.0 133 70.7
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 6.2e-52 207.6 131 71.8
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 6.2e-52 207.6 133 69.9
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 8.1e-52 207.2 133 71.4
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 8.1e-52 207.2 133 70.7
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 1.1e-51 206.8 133 70.7
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 1.1e-51 206.8 123 75.6
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 1.1e-51 206.8 123 75.6
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 1.1e-51 206.8 123 75.6
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 1.1e-51 206.8 123 75.6
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 1.1e-51 206.8 123 75.6
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 1.1e-51 206.8 123 75.6
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 1.1e-51 206.8 127 74.8
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.1e-51 206.8 132 71.2
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 1.4e-51 206.5 134 68.7
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.8e-51 206.1 133 72.2
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 1.8e-51 206.1 133 70.7
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 2.3e-51 205.7 133 70.7
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 2.3e-51 205.7 131 71.8
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 2.3e-51 205.7 131 72.5
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 3.1e-51 205.3 133 71.4
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 3.1e-51 205.3 134 67.9
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 4.0e-51 204.9 133 71.4
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 4.0e-51 204.9 133 69.9
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 5.2e-51 204.5 133 69.9
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 5.2e-51 204.5 133 69.9
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 5.2e-51 204.5 129 74.4
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 5.2e-51 204.5 133 71.4
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 6.8e-51 204.1 133 69.9
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 8.9e-51 203.8 130 72.3
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.2e-50 203.4 134 69.4
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.2e-50 203.4 134 69.4
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 1.5e-50 203.0 133 69.9
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 1.5e-50 203.0 131 71.8
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 1.5e-50 203.0 132 70.5
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 2.0e-50 202.6 133 69.9
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 2.6e-50 202.2 134 67.2
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 2.6e-50 202.2 131 70.2
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.6e-50 202.2 132 69.7
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 2.6e-50 202.2 133 69.2
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 7.6e-50 200.7 131 68.7
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 7.6e-50 200.7 133 67.7
Zm00001eb440860 Zea mays HOM05D003658 ORTHO05D004457 7.6e-50 200.7 133 67.7
Dinv14501 Davidia involucrata HOM05D003658 ORTHO05D004457 1.7e-49 199.5 130 71.5
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 1.7e-49 199.5 133 68.4
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 2.2e-49 199.1 133 68.4
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 2.2e-49 199.1 131 67.9
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 2.9e-49 198.7 131 67.9
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 2.9e-49 198.7 131 69.5
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 3.8e-49 198.4 131 69.5
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 3.8e-49 198.4 133 66.9
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 3.8e-49 198.4 131 69.5
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 6.4e-49 197.6 131 69.5
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 8.4e-49 197.2 131 69.5
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 8.4e-49 197.2 131 67.9
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 8.4e-49 197.2 131 67.2
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 1.1e-48 196.8 132 66.7
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 1.4e-48 196.4 133 66.9
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 1.4e-48 196.4 133 66.2
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 1.9e-48 196.1 133 65.4
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 2.4e-48 195.7 131 68.7
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 2.4e-48 195.7 133 67.7
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 3.2e-48 195.3 131 67.2
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 4.1e-48 194.9 131 67.9
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 5.4e-48 194.5 133 66.9
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 1.2e-47 193.4 131 67.2
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 4.6e-47 191.4 131 67.2
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 8.6e-46 187.2 133 63.9
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 4.3e-45 184.9 129 65.9
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.7e-44 181.4 133 59.4
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.4e-43 179.9 167 53.3
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 5.2e-43 177.9 133 58.6
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 1.5e-42 176.4 137 58.4
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 2.6e-42 175.6 133 60.9
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 2.9e-41 172.2 131 58.0
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 2.5e-37 159.1 122 57.4
Peaxi162Scf00809g00417 Petunia axillaris HOM05D003658 ORTHO05D004457 7.1e-32 141.0 92 68.5
Cc01_g11620 Coffea canephora HOM05D003658 ORTHO05D004457 7.4e-29 131.0 132 54.5
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 1.1e-27 127.1 131 47.3
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 2.6e-26 122.5 134 45.5
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 1.7e-25 119.8 124 50.0
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 1.2e-23 113.6 70 71.4
TAR633G2225 Trochodendron aralioides HOM05D003658 ORTHO05D004457 9.6e-21 104.0 66 71.2
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.1e-19 100.5 63 73.0
Haze_26994 Corylus avellana HOM05D003658 ORTHO05D004457 9.3e-16 87.4 121 36.4
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 3.3e-13 79.0 119 33.6
Actinidia07110 Actinidia chinensis HOM05D003658 ORTHO05D004457 2.4e-11 72.8 81 49.4
Cfa022738 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.2e-10 70.5 118 35.6
Glyma.20G148781 Glycine max HOM05D003658 ORTHO05D004457 4.5e-10 68.6 43 69.8
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 1.3e-09 67.0 121 29.8


User provided reference genes

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