Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0004630 Simmondsia chinensis HOM05D004616 ORTHO05D005860 2.4e-176 622.1 320 100.0
Sc12g0004600 Simmondsia chinensis HOM05D004616 ORTHO05D005860 3.0e-163 578.6 301 99.3
Sc06g0008700 Simmondsia chinensis HOM05D004616 ORTHO05D005860 6.2e-108 394.8 304 70.1
Hund18773 Selenicereus undatus HOM05D004616 ORTHO05D005860 7.4e-85 318.2 307 61.2
Prupe.6G135500 Prunus persica HOM05D004616 ORTHO05D005860 1.7e-81 307.0 313 57.5
Hund20933 Selenicereus undatus HOM05D004616 ORTHO05D005860 5.0e-81 305.4 305 58.0
CiPaw.14G098200 Carya illinoinensis HOM05D004616 ORTHO05D005860 1.2e-79 300.8 312 57.7
RcHm_v2.0_Chr5g0045751 Rosa chinensis HOM05D004616 ORTHO05D005860 1.6e-79 300.4 311 57.6
Thecc.09G279200 Theobroma cacao HOM05D004616 ORTHO05D005860 1.6e-79 300.4 311 57.6
MD11G1168400 Malus domestica HOM05D004616 ORTHO05D005860 2.1e-79 300.1 310 57.7
Cfa009990 Carpinus fangiana HOM05D004616 ORTHO05D005860 2.7e-79 299.7 311 58.2
EL10Ac7g16331 Beta vulgaris HOM05D004616 ORTHO05D005860 1.0e-78 297.7 306 57.5
Dinv22821 Davidia involucrata HOM05D004616 ORTHO05D005860 1.4e-78 297.4 311 57.9
FvH4_3g25610 Fragaria vesca HOM05D004616 ORTHO05D005860 6.7e-78 295.0 311 56.6
FAN11G2307 Fragaria x ananassa HOM05D004616 ORTHO05D005860 6.7e-78 295.0 311 56.6
Potri.009G160100 Populus trichocarpa HOM05D004616 ORTHO05D005860 5.7e-77 292.0 310 57.4
FAN21G3247 Fragaria x ananassa HOM05D004616 ORTHO05D005860 2.2e-76 290.0 311 56.3
CSS0008379 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 1.4e-75 287.3 311 56.6
FAN16G2710 Fragaria x ananassa HOM05D004616 ORTHO05D005860 3.1e-75 286.2 311 55.9
Lj2A968G32 Lonicera japonica HOM05D004616 ORTHO05D005860 3.1e-75 286.2 306 55.6
FAN25G2905 Fragaria x ananassa HOM05D004616 ORTHO05D005860 5.3e-75 285.4 311 55.6
Manes.04G001500 Manihot esculenta HOM05D004616 ORTHO05D005860 7.0e-75 285.0 315 56.5
Eucgr.B03827 Eucalyptus grandis HOM05D004616 ORTHO05D005860 9.1e-75 284.6 307 56.0
Atru.chr3.3173 Acer truncatum HOM05D004616 ORTHO05D005860 1.6e-74 283.9 310 56.1
MD03G1149500 Malus domestica HOM05D004616 ORTHO05D005860 1.6e-74 283.9 311 56.3
Potri.004G196800 Populus trichocarpa HOM05D004616 ORTHO05D005860 3.5e-74 282.7 316 57.0
Nn6g34808 Nelumbo nucifera HOM05D004616 ORTHO05D005860 5.9e-74 282.0 312 56.4
Sabra04G0133400 Salix brachista HOM05D004616 ORTHO05D005860 2.2e-73 280.0 316 57.0
Gohir.D09G096700 Gossypium hirsutum HOM05D004616 ORTHO05D005860 5.0e-73 278.9 311 55.3
CANSAT54G1125 Cannabis sativa HOM05D004616 ORTHO05D005860 6.5e-73 278.5 312 55.1
Gorai.006G113400 Gossypium raimondii HOM05D004616 ORTHO05D005860 1.9e-72 276.9 311 55.0
CSS0010321 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 2.5e-72 276.6 307 58.0
Gohir.A09G096900 Gossypium hirsutum HOM05D004616 ORTHO05D005860 2.5e-72 276.6 311 55.0
Ciclev10030048m.g Citrus clementina HOM05D004616 ORTHO05D005860 4.2e-72 275.8 308 53.9
Sabra09G0125300 Salix brachista HOM05D004616 ORTHO05D005860 4.2e-72 275.8 310 54.8
TAR623G1480 Trochodendron aralioides HOM05D004616 ORTHO05D005860 3.6e-71 272.7 309 55.7
GSVIVG01036084001 Vitis vinifera HOM05D004616 ORTHO05D005860 4.7e-71 272.3 306 57.5
CSS0027671 Camellia sinensis var. sinensis HOM05D004616 ORTHO05D005860 8.0e-71 271.6 307 58.0
Rhsim13G0113400 Rhododendron simsii HOM05D004616 ORTHO05D005860 2.3e-70 270.0 310 55.5
Haze_23351 Corylus avellana HOM05D004616 ORTHO05D005860 6.7e-70 268.5 357 49.9
Duzib150G0968 Durio zibethinus HOM05D004616 ORTHO05D005860 1.5e-69 267.3 311 53.4
DCAR_012213 Daucus carota HOM05D004616 ORTHO05D005860 3.3e-69 266.2 302 53.6
COL.COLO4_34009 Corchorus olitorius HOM05D004616 ORTHO05D005860 7.5e-69 265.0 318 52.2
TAR633G1321 Trochodendron aralioides HOM05D004616 ORTHO05D005860 1.7e-68 263.8 313 54.0
Actinidia24228 Actinidia chinensis HOM05D004616 ORTHO05D005860 3.7e-68 262.7 311 52.7
Actinidia07256 Actinidia chinensis HOM05D004616 ORTHO05D005860 3.1e-67 259.6 311 53.7
CAN.G919.39 Capsicum annuum HOM05D004616 ORTHO05D005860 2.0e-66 256.9 319 53.6
PSO801G0782 Papaver somniferum HOM05D004616 ORTHO05D005860 2.0e-66 256.9 314 53.8
Cc01_g08850 Coffea canephora HOM05D004616 ORTHO05D005860 4.5e-66 255.8 323 51.1
QL01p011880 Quercus lobata HOM05D004616 ORTHO05D005860 5.9e-66 255.4 318 51.6
Nitab4.5_0000937g0090 Nicotiana tabacum HOM05D004616 ORTHO05D005860 6.5e-65 251.9 312 52.2
Nitab4.5_0005472g0060 Nicotiana tabacum HOM05D004616 ORTHO05D005860 6.5e-65 251.9 320 52.5
FAN25G2333 Fragaria x ananassa HOM05D004616 ORTHO05D005860 2.5e-64 250.0 239 59.8
Aqoxy2G01054 Aquilegia oxysepala HOM05D004616 ORTHO05D005860 5.5e-64 248.8 319 52.4
Dinv08937 Davidia involucrata HOM05D004616 ORTHO05D005860 1.6e-63 247.3 305 52.8
Solyc11g068660.2 Solanum lycopersicum HOM05D004616 ORTHO05D005860 2.1e-63 246.9 311 51.4
PGSC0003DMG400026348 Solanum tuberosum HOM05D004616 ORTHO05D005860 3.6e-63 246.1 312 51.0
TWI79G0721 Tripterygium wilfordii HOM05D004616 ORTHO05D005860 4.7e-63 245.7 315 50.8
Duzib168G0483 Durio zibethinus HOM05D004616 ORTHO05D005860 6.1e-63 245.4 309 50.8
Sopen11g027380 Solanum pennellii HOM05D004616 ORTHO05D005860 1.4e-62 244.2 311 51.1
PSO339G4556 Papaver somniferum HOM05D004616 ORTHO05D005860 5.2e-62 242.3 315 52.1
Ca_01648_v3 Cicer arietinum L. HOM05D004616 ORTHO05D005860 6.8e-62 241.9 313 52.7
MSTRG.18768 Avicennia marina HOM05D004616 ORTHO05D005860 8.8e-62 241.5 317 48.9
Peaxi162Scf00224g00117 Petunia axillaris HOM05D004616 ORTHO05D005860 1.2e-61 241.1 311 50.2
Lj3g0000295 Lotus japonicus HOM05D004616 ORTHO05D005860 4.4e-61 239.2 316 52.5
PGR102G3030 Punica granatum HOM05D004616 ORTHO05D005860 5.7e-61 238.8 311 51.1
CDE08G0566 Ceratophyllum demersum HOM05D004616 ORTHO05D005860 1.7e-60 237.3 309 49.5
arahy.Tifrunner.gnm1.ann1.38CPMH Arachis hypogaea HOM05D004616 ORTHO05D005860 4.8e-60 235.7 310 47.7
MELO3C004671.2 Cucumis melo HOM05D004616 ORTHO05D005860 8.3e-60 235.0 321 49.5
TWI75G1519 Tripterygium wilfordii HOM05D004616 ORTHO05D005860 8.3e-60 235.0 313 51.1
CsaV3_1G015050 Cucumis sativus L. HOM05D004616 ORTHO05D005860 1.1e-59 234.6 320 48.8
Oeu031468.1 Olea europaea HOM05D004616 ORTHO05D005860 2.4e-59 233.4 327 48.3
vmacro03327 Vaccinium macrocarpon HOM05D004616 ORTHO05D005860 2.4e-59 233.4 281 52.3
Lalb_Chr01g0004921 Lupinus albus HOM05D004616 ORTHO05D005860 7.0e-59 231.9 314 51.9
arahy.Tifrunner.gnm1.ann1.TN2AAQ Arachis hypogaea HOM05D004616 ORTHO05D005860 2.7e-58 229.9 310 47.1
CAN.G745.9 Capsicum annuum HOM05D004616 ORTHO05D005860 7.7e-58 228.4 312 49.7
Lj3g0004055 Lotus japonicus HOM05D004616 ORTHO05D005860 5.0e-57 225.7 171 71.9
Cpa.g.sc195.20 Carica papaya HOM05D004616 ORTHO05D005860 1.5e-56 224.2 296 51.0
ECA233G2149 Erigeron canadensis HOM05D004616 ORTHO05D005860 2.5e-56 223.4 148 76.4
CDE06G1573 Ceratophyllum demersum HOM05D004616 ORTHO05D005860 5.5e-56 222.2 314 48.1
Phvul.011G096000 Phaseolus vulgaris HOM05D004616 ORTHO05D005860 5.5e-56 222.2 311 49.2
Glyma.12G091600 Glycine max HOM05D004616 ORTHO05D005860 1.6e-55 220.7 318 47.5
Gohir.A07G111000 Gossypium hirsutum HOM05D004616 ORTHO05D005860 1.6e-55 220.7 170 70.0
Gorai.001G123000 Gossypium raimondii HOM05D004616 ORTHO05D005860 2.1e-55 220.3 170 69.4
Nitab4.5_0000731g0060 Nicotiana tabacum HOM05D004616 ORTHO05D005860 2.1e-55 220.3 317 47.9
Medtr2g086780 Medicago truncatula HOM05D004616 ORTHO05D005860 2.8e-55 219.9 310 47.1
THA.LOC104826435 Tarenaya hassleriana HOM05D004616 ORTHO05D005860 2.8e-55 219.9 319 47.0
VMungo1127G2084 Vigna mungo HOM05D004616 ORTHO05D005860 2.8e-55 219.9 312 49.7
Zm00001eb421980 Zea mays HOM05D004616 ORTHO05D005860 6.1e-55 218.8 315 46.7
Psat5g257760 Pisum sativum HOM05D004616 ORTHO05D005860 2.3e-54 216.9 324 47.8
Sopen06g030640 Solanum pennellii HOM05D004616 ORTHO05D005860 2.3e-54 216.9 318 47.8
PGSC0003DMG400005888 Solanum tuberosum HOM05D004616 ORTHO05D005860 2.3e-54 216.9 321 48.9
TPR.G4527 Trifolium pratense HOM05D004616 ORTHO05D005860 2.3e-54 216.9 272 50.7
Zm00001eb083750 Zea mays HOM05D004616 ORTHO05D005860 3.0e-54 216.5 313 46.3
HPP92_001102 Vanilla planifolia HOM05D004616 ORTHO05D005860 4.0e-54 216.1 315 47.3
AUR62020259 Chenopodium quinoa HOM05D004616 ORTHO05D005860 5.2e-54 215.7 332 45.5
Glyma.11G181500 Glycine max HOM05D004616 ORTHO05D005860 6.8e-54 215.3 320 47.8
SGA_v2.0_scaffold100G29603 Striga asiatica HOM05D004616 ORTHO05D005860 8.8e-54 214.9 323 45.5
Lsat_1_v5_gn_6_38401 Lactuca sativa HOM05D004616 ORTHO05D005860 1.2e-53 214.5 316 46.2
Sed0016133 Sechium edule HOM05D004616 ORTHO05D005860 1.2e-53 214.5 270 50.0
AUR62001524 Chenopodium quinoa HOM05D004616 ORTHO05D005860 4.4e-53 212.6 301 47.5
Os04g0414100 Oryza sativa ssp. japonica HOM05D004616 ORTHO05D005860 4.4e-53 212.6 325 44.3
unitig_899.g14957 Utricularia gibba HOM05D004616 ORTHO05D005860 1.3e-52 211.1 304 46.4
Solyc06g074220.3 Solanum lycopersicum HOM05D004616 ORTHO05D005860 2.4e-51 206.8 315 47.6
AL4G21290 Arabidopsis lyrata HOM05D004616 ORTHO05D005860 7.0e-51 205.3 310 45.8
ATR0820G275 Amborella trichopoda HOM05D004616 ORTHO05D005860 2.0e-50 203.8 325 46.5
Nitab4.5_0008177g0040 Nicotiana tabacum HOM05D004616 ORTHO05D005860 2.3e-49 200.3 286 48.6
Sp4g10140 Schrenkiella parvula HOM05D004616 ORTHO05D005860 2.9e-49 199.9 310 44.8
SEGI_03435 Sequoiadendron giganteum HOM05D004616 ORTHO05D005860 2.9e-49 199.9 214 54.2
Aa31LG5G8750 Aethionema arabicum HOM05D004616 ORTHO05D005860 3.8e-49 199.5 314 47.1
HanXRQChr13g0397601 Helianthus annuus HOM05D004616 ORTHO05D005860 1.9e-48 197.2 171 64.3
THA.LOC104800519 Tarenaya hassleriana HOM05D004616 ORTHO05D005860 1.6e-47 194.1 311 46.0
Carub.0004s0797 Capsella rubella HOM05D004616 ORTHO05D005860 4.7e-47 192.6 316 44.9
BcaB02g10086 Brassica carinata HOM05D004616 ORTHO05D005860 1.4e-46 191.0 316 44.6
HanXRQChr14g0438001 Helianthus annuus HOM05D004616 ORTHO05D005860 1.8e-46 190.7 115 80.0
SGA_v2.0_scaffold22G09840 Striga asiatica HOM05D004616 ORTHO05D005860 2.3e-46 190.3 235 51.1
A04p20900 Brassica napus HOM05D004616 ORTHO05D005860 3.0e-46 189.9 183 57.9
Peaxi162Scf00091g00076 Petunia axillaris HOM05D004616 ORTHO05D005860 3.0e-46 189.9 309 46.3
Thhalv10001965m.g Eutrema salsugineum HOM05D004616 ORTHO05D005860 4.0e-46 189.5 321 43.6
AT2G27350 Arabidopsis thaliana HOM05D004616 ORTHO05D005860 1.5e-45 187.6 315 42.9
BcaC02g10868 Brassica carinata HOM05D004616 ORTHO05D005860 1.5e-45 187.6 196 58.2
C04p24240 Brassica napus HOM05D004616 ORTHO05D005860 1.5e-45 187.6 196 58.2
CARHR119940 Cardamine hirsuta HOM05D004616 ORTHO05D005860 2.2e-44 183.7 234 47.4
Gohir.D07G114800 Gossypium hirsutum HOM05D004616 ORTHO05D005860 3.7e-44 183.0 270 49.3
BolC4t23922H Brassica oleracea HOM05D004616 ORTHO05D005860 1.1e-43 181.4 195 55.9
Mapoly0015s0108 Marchantia polymorpha HOM05D004616 ORTHO05D005860 2.4e-43 180.3 181 58.0
Migut.D02430 Erythranthe guttata HOM05D004616 ORTHO05D005860 5.4e-43 179.1 311 42.4
BraA04t17661Z Brassica rapa HOM05D004616 ORTHO05D005860 7.0e-43 178.7 230 48.3
BolC4t27203H Brassica oleracea HOM05D004616 ORTHO05D005860 4.6e-42 176.0 191 51.8
AagrBONN_evm.TU.Sc2ySwM_344.3429 Anthoceros agrestis HOM05D004616 ORTHO05D005860 3.0e-41 173.3 176 60.2
Pp3c7_5530 Physcomitrium patens HOM05D004616 ORTHO05D005860 5.0e-41 172.6 173 56.1
Manes.11G164000 Manihot esculenta HOM05D004616 ORTHO05D005860 1.5e-40 171.0 312 43.3
A07p18140 Brassica napus HOM05D004616 ORTHO05D005860 2.5e-40 170.2 235 47.2
BraA07t29532Z Brassica rapa HOM05D004616 ORTHO05D005860 3.3e-40 169.9 235 47.7
BcaB01g03068 Brassica carinata HOM05D004616 ORTHO05D005860 2.8e-39 166.8 305 41.6
BcaB06g28144 Brassica carinata HOM05D004616 ORTHO05D005860 5.2e-38 162.5 305 39.7
C04p56710 Brassica napus HOM05D004616 ORTHO05D005860 5.2e-38 162.5 305 39.7
Ah.08g223540 Amaranthus hybridus HOM05D004616 ORTHO05D005860 4.9e-36 156.0 81 91.4
SMO361G0078 Selaginella moellendorffii HOM05D004616 ORTHO05D005860 2.4e-35 153.7 171 53.2
Psat5g173040 Pisum sativum HOM05D004616 ORTHO05D005860 3.4e-29 133.3 85 76.5
SMO365G0021 Selaginella moellendorffii HOM05D004616 ORTHO05D005860 3.4e-13 80.1 45 82.2
SMO176G0006 Selaginella moellendorffii HOM05D000902 ORTHO05D005860 9.9e-13 78.6 45 80.0
Rhsim07G0227400 Rhododendron simsii HOM05D004616 ORTHO05D339556 4.9e-12 76.3 51 70.6
Lsat_1_v5_gn_8_23480 Lactuca sativa HOM05D004616 ORTHO05D005860 7.8e-10 68.9 40 77.5
Mapoly0012s0095 Marchantia polymorpha HOM05D006446 ORTHO05D007832 3.3e-08 63.5 93 38.7
Aqoxy5G01186 Aquilegia oxysepala HOM05D006446 ORTHO05D007832 8.1e-07 58.9 66 39.4
Gohir.D07G114900 Gossypium hirsutum HOM05D001305 ORTHO05D001934 8.1e-07 58.9 26 100.0
Pp3c17_8570 Physcomitrium patens HOM05D006446 ORTHO05D007832 1.8e-06 57.8 68 41.2
ATR0762G017 Amborella trichopoda HOM05D006446 ORTHO05D007832 5.3e-06 56.2 90 32.2
AUR62001902 Chenopodium quinoa HOM05D006446 ORTHO05D007832 5.3e-06 56.2 66 37.9
AUR62003910 Chenopodium quinoa HOM05D006446 ORTHO05D007832 5.3e-06 56.2 66 37.9
Lsat_1_v5_gn_4_165160 Lactuca sativa HOM05D006446 ORTHO05D007832 6.9e-06 55.8 87 35.6
HPP92_014795 Vanilla planifolia HOM05D006446 ORTHO05D007832 6.9e-06 55.8 69 33.3
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 9.0e-06 55.5 66 37.9
THA.LOC104827244 Tarenaya hassleriana HOM05D006446 ORTHO05D007832 9.0e-06 55.5 66 39.4


User provided reference genes

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