Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 2.6e-183 645.2 319 100.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.4e-128 463.4 314 72.0
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 3.0e-126 455.7 316 72.2
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 4.2e-120 435.3 321 66.0
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 3.0e-118 429.1 312 68.3
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 5.6e-117 424.9 320 65.3
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 6.9e-115 417.9 322 64.9
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.7e-113 413.3 322 65.2
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 2.9e-113 412.5 362 59.9
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 2.9e-113 412.5 315 62.9
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 8.4e-113 411.0 316 63.6
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.7e-111 406.0 318 62.6
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 5.1e-110 401.7 319 64.6
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 4.3e-109 398.7 317 62.8
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 4.3e-109 398.7 324 63.9
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 2.4e-107 392.9 377 55.7
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 5.3e-107 391.7 328 62.5
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 1.2e-106 390.6 336 61.0
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 3.4e-106 389.0 317 62.5
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 4.5e-106 388.7 324 62.0
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 7.6e-106 387.9 238 76.5
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.3e-105 387.1 317 58.7
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 2.9e-105 386.0 317 59.6
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 3.8e-105 385.6 317 63.1
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 6.4e-105 384.8 318 60.1
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 6.4e-105 384.8 316 60.8
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.1e-104 384.0 315 62.2
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 4.2e-104 382.1 357 54.3
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 9.3e-104 380.9 313 62.0
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 9.3e-104 380.9 328 58.5
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.2e-103 380.6 326 61.0
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.1e-103 379.8 284 65.5
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 2.3e-102 376.3 318 62.3
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 5.1e-102 375.2 319 60.8
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 6.7e-102 374.8 313 62.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.1e-101 374.0 325 60.3
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.9e-101 373.2 325 60.3
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 4.3e-101 372.1 322 60.6
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 7.4e-101 371.3 323 59.4
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 7.4e-101 371.3 323 59.4
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 7.4e-101 371.3 317 59.0
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 3.7e-100 369.0 313 59.4
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 6.2e-100 368.2 316 57.6
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.4e-99 367.1 267 65.5
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.4e-99 367.1 249 68.7
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 2.4e-99 366.3 322 58.7
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 2.4e-99 366.3 322 58.7
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 4.0e-99 365.5 321 58.3
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 4.0e-99 365.5 319 58.3
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 6.9e-99 364.8 323 59.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 6.9e-99 364.8 320 58.1
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 9.0e-99 364.4 318 59.1
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 9.0e-99 364.4 323 59.1
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.2e-98 364.0 315 61.0
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 1.5e-98 363.6 318 59.1
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 2.0e-98 363.2 317 60.3
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 2.6e-98 362.8 316 59.2
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.6e-98 362.8 319 57.4
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.4e-98 362.5 317 60.9
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 5.8e-98 361.7 317 60.6
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 1.0e-97 360.9 323 58.8
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.3e-97 360.5 267 64.8
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.2e-97 359.8 323 58.2
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 2.9e-97 359.4 271 64.9
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 2.9e-97 359.4 318 57.2
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.5e-97 358.2 315 60.3
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 8.4e-97 357.8 321 58.9
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 8.4e-97 357.8 319 56.4
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 8.4e-97 357.8 317 58.0
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.4e-96 357.1 299 61.5
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.9e-96 356.7 323 58.5
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.9e-96 356.7 319 56.4
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.9e-96 356.7 340 53.2
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 2.5e-96 356.3 323 57.9
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 2.5e-96 356.3 272 62.1
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 2.5e-96 356.3 312 59.6
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 2.5e-96 356.3 320 56.6
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 7.1e-96 354.8 263 63.1
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 2.7e-95 352.8 314 58.3
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 2.7e-95 352.8 323 55.1
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 3.5e-95 352.4 320 56.9
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 4.6e-95 352.1 313 58.1
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.1e-93 347.4 250 64.4
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 4.3e-93 345.5 317 57.4
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 4.3e-93 345.5 211 77.3
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 7.4e-93 344.7 341 53.1
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 3.7e-92 342.4 374 50.5
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 8.2e-92 341.3 280 57.9
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 1.4e-91 340.5 348 50.9
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 3.1e-91 339.3 319 55.8
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 4.1e-91 339.0 338 53.3
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.2e-90 337.4 273 60.4
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-90 336.3 350 51.1
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-90 336.3 350 51.1
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 5.8e-90 335.1 318 56.9
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.3e-89 334.0 330 50.6
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.3e-89 334.0 316 56.0
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 2.2e-89 333.2 327 53.8
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 2.9e-89 332.8 281 55.5
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 2.5e-88 329.7 236 66.5
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 5.5e-88 328.6 324 55.9
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 2.7e-87 326.2 349 50.7
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 7.9e-87 324.7 287 62.7
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 8.7e-86 321.2 214 71.0
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 1.6e-84 317.0 283 53.4
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 8.2e-84 314.7 356 48.9
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.3e-78 296.6 281 55.2
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 3.9e-78 295.8 363 44.6
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.5e-77 293.1 239 61.1
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.1e-67 261.2 317 48.6
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.5e-64 250.0 221 55.2
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.8e-60 236.5 247 51.4
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 9.1e-59 231.5 293 45.1
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.6e-58 230.7 401 39.2
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 2.7e-58 229.9 240 51.7
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 5.9e-58 228.8 225 55.1
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 2.2e-57 226.9 332 39.5
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 3.8e-57 226.1 366 37.7
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 3.2e-56 223.0 207 58.0
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 3.2e-56 223.0 243 51.0
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 2.2e-52 210.3 319 39.5
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 4.8e-52 209.1 248 49.2
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 9.1e-51 204.9 235 44.7
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 1.8e-46 190.7 251 38.2
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 9.8e-45 184.9 219 50.2
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.4e-43 181.0 190 50.0
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 5.9e-42 175.6 189 52.4
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 1.0e-41 174.9 318 38.1
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 3.6e-39 166.4 200 42.0
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.7e-36 157.5 202 45.5
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 2.9e-36 156.8 93 79.6
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 3.5e-34 149.8 163 53.4
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 3.0e-33 146.7 113 58.4
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 3.7e-28 129.8 169 41.4
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.0e-26 124.0 285 32.6
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 4.9e-20 102.8 110 52.7
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 2.4e-19 100.5 194 30.4
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 2.5e-16 90.5 196 30.6
EL10Ac7g16202 Beta vulgaris HOM05D046570 ORTHO05D006400 3.2e-11 73.6 81 53.1
EL10Ac7g16208 Beta vulgaris HOM05D046570 ORTHO05D006400 9.2e-11 72.0 81 51.9
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 7.8e-10 68.9 62 51.6
Cre03.g181650 Chlamydomonas reinhardtii HOM05D005396 ORTHO05D006400 1.1e-08 65.1 151 23.8


User provided reference genes

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