Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009080 Simmondsia chinensis HOM05D003916 ORTHO05D004655 1.7e-41 172.2 83 100.0
AUR62018571 Chenopodium quinoa HOM05D003916 ORTHO05D004655 3.2e-32 141.4 109 67.9
AUR62020845 Chenopodium quinoa HOM05D003916 ORTHO05D004655 3.2e-32 141.4 109 67.9
Hund20252 Selenicereus undatus HOM05D003916 ORTHO05D004655 5.5e-32 140.6 109 67.0
Cfa010792 Carpinus fangiana HOM05D003916 ORTHO05D004655 2.1e-31 138.7 109 67.0
Lalb_Chr03g0040011 Lupinus albus HOM05D003916 ORTHO05D004655 2.7e-31 138.3 109 65.1
Thecc.01G409200 Theobroma cacao HOM05D003916 ORTHO05D004655 2.7e-31 138.3 109 67.9
VMungo1127G0323 Vigna mungo HOM05D003916 ORTHO05D004655 2.7e-31 138.3 109 66.1
Phvul.011G010100 Phaseolus vulgaris HOM05D003916 ORTHO05D004655 3.6e-31 137.9 109 65.1
CiPaw.13G006500 Carya illinoinensis HOM05D003916 ORTHO05D004655 4.7e-31 137.5 109 67.0
Manes.10G140600 Manihot esculenta HOM05D003916 ORTHO05D004655 4.7e-31 137.5 109 67.0
QL04p008135 Quercus lobata HOM05D003916 ORTHO05D004655 4.7e-31 137.5 109 66.1
QL04p008511 Quercus lobata HOM05D003916 ORTHO05D004655 4.7e-31 137.5 109 66.1
Ca_04149_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 6.1e-31 137.1 109 66.1
Ca_22196_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 6.1e-31 137.1 109 66.1
Ciclev10033103m.g Citrus clementina HOM05D003916 ORTHO05D004655 6.1e-31 137.1 109 67.0
CSS0038705 Camellia sinensis var. sinensis HOM05D003916 ORTHO05D004655 7.9e-31 136.7 109 67.0
MELO3C023983.2 Cucumis melo HOM05D003916 ORTHO05D004655 7.9e-31 136.7 108 67.6
CsaV3_3G032080 Cucumis sativus L. HOM05D003916 ORTHO05D004655 7.9e-31 136.7 108 67.6
Gohir.A05G320501 Gossypium hirsutum HOM05D003916 ORTHO05D004655 7.9e-31 136.7 110 65.5
Lj3g0019679 Lotus japonicus HOM05D003916 ORTHO05D004655 7.9e-31 136.7 109 66.1
Potri.009G070900 Populus trichocarpa HOM05D003916 ORTHO05D004655 7.9e-31 136.7 109 67.0
arahy.Tifrunner.gnm1.ann1.YBFT0T Arachis hypogaea HOM05D003916 ORTHO05D004655 1.0e-30 136.3 109 66.1
Haze_25581 Corylus avellana HOM05D003916 ORTHO05D004655 1.0e-30 136.3 105 68.6
Glyma.09G228500 Glycine max HOM05D003916 ORTHO05D004655 1.0e-30 136.3 109 65.1
Haze_03179 Corylus avellana HOM05D003916 ORTHO05D004655 1.4e-30 136.0 106 67.9
Glyma.12G008000 Glycine max HOM05D003916 ORTHO05D004655 1.4e-30 136.0 109 64.2
Medtr4g037750 Medicago truncatula HOM05D003916 ORTHO05D004655 1.4e-30 136.0 109 64.2
Psat0s2770g0080 Pisum sativum HOM05D003916 ORTHO05D004655 1.4e-30 136.0 109 64.2
Rhsim07G0056500 Rhododendron simsii HOM05D003916 ORTHO05D004655 1.4e-30 136.0 109 67.0
TPR.G3662 Trifolium pratense HOM05D003916 ORTHO05D004655 1.4e-30 136.0 109 64.2
GSVIVG01036004001 Vitis vinifera HOM05D003916 ORTHO05D004655 1.4e-30 136.0 109 66.1
Actinidia19401 Actinidia chinensis HOM05D003916 ORTHO05D004655 1.8e-30 135.6 108 66.7
EL10Ac3g07468 Beta vulgaris HOM05D003916 ORTHO05D004655 1.8e-30 135.6 109 65.1
Dinv43429 Davidia involucrata HOM05D003916 ORTHO05D004655 1.8e-30 135.6 109 66.1
Duzib138G1764 Durio zibethinus HOM05D003916 ORTHO05D004655 1.8e-30 135.6 109 66.1
ECA234G4622 Erigeron canadensis HOM05D003916 ORTHO05D004655 1.8e-30 135.6 109 65.1
Gohir.D05G317100 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.8e-30 135.6 110 64.5
Gorai.009G339400 Gossypium raimondii HOM05D003916 ORTHO05D004655 1.8e-30 135.6 110 64.5
Nn7g36243 Nelumbo nucifera HOM05D003916 ORTHO05D004655 1.8e-30 135.6 109 65.1
Sed0020332 Sechium edule HOM05D003916 ORTHO05D004655 1.8e-30 135.6 108 66.7
COL.COLO4_04866 Corchorus olitorius HOM05D003916 ORTHO05D004655 2.3e-30 135.2 109 66.1
Hma1.2p1_0184F.1_g081310 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 2.3e-30 135.2 109 65.1
Hma1.2p1_0495F.1_g165640 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 2.3e-30 135.2 109 65.1
Manes.07G007100 Manihot esculenta HOM05D003916 ORTHO05D004655 2.3e-30 135.2 109 66.1
ClCG10G012300 Citrullus lanatus HOM05D003916 ORTHO05D004655 3.9e-30 134.4 106 67.9
COL.COLO4_11374 Corchorus olitorius HOM05D003916 ORTHO05D004655 3.9e-30 134.4 109 65.1
DCAR_022384 Daucus carota HOM05D003916 ORTHO05D004655 3.9e-30 134.4 106 67.9
Eucgr.G03369 Eucalyptus grandis HOM05D003916 ORTHO05D004655 3.9e-30 134.4 109 64.2
PGR031G2324 Punica granatum HOM05D003916 ORTHO05D004655 3.9e-30 134.4 109 65.1
vmacro13676 Vaccinium macrocarpon HOM05D003916 ORTHO05D004655 3.9e-30 134.4 106 67.9
Atru.chr11.2605 Acer truncatum HOM05D003916 ORTHO05D004655 5.1e-30 134.0 109 65.1
Prupe.8G106600 Prunus persica HOM05D003916 ORTHO05D004655 6.7e-30 133.7 109 65.1
arahy.Tifrunner.gnm1.ann1.8R0KJ7 Arachis hypogaea HOM05D003916 ORTHO05D004655 8.8e-30 133.3 106 67.0
FAN27G3016 Fragaria x ananassa HOM05D003916 ORTHO05D004655 8.8e-30 133.3 109 65.1
THA.LOC104801974 Tarenaya hassleriana HOM05D003916 ORTHO05D004655 8.8e-30 133.3 109 66.1
Zm00001eb214480 Zea mays HOM05D003916 ORTHO05D004655 8.8e-30 133.3 106 67.0
Zm00001eb247210 Zea mays HOM05D003916 ORTHO05D004655 8.8e-30 133.3 106 67.0
Dinv09344 Davidia involucrata HOM05D003916 ORTHO05D004655 1.1e-29 132.9 111 64.9
FvH4_2g07830 Fragaria vesca HOM05D003916 ORTHO05D004655 1.1e-29 132.9 109 65.1
FAN15G2464 Fragaria x ananassa HOM05D003916 ORTHO05D004655 1.1e-29 132.9 109 65.1
FAN24G3392 Fragaria x ananassa HOM05D003916 ORTHO05D004655 1.1e-29 132.9 109 65.1
MD05G1071600 Malus domestica HOM05D003916 ORTHO05D004655 1.5e-29 132.5 109 64.2
unitig_0.g2398 Utricularia gibba HOM05D003916 ORTHO05D004655 1.5e-29 132.5 109 64.2
MSTRG.9650 Avicennia marina HOM05D003916 ORTHO05D004655 2.0e-29 132.1 109 64.2
MBI04_g41600_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 2.0e-29 132.1 110 63.6
MD10G1083600 Malus domestica HOM05D003916 ORTHO05D004655 2.0e-29 132.1 109 64.2
Oeu048996.1 Olea europaea HOM05D003916 ORTHO05D004655 2.0e-29 132.1 106 67.0
Peaxi162Scf00619g00024 Petunia axillaris HOM05D003916 ORTHO05D004655 2.0e-29 132.1 109 65.1
SalBow8G4163 Salvia bowleyana HOM05D003916 ORTHO05D004655 2.0e-29 132.1 109 64.2
Sc10g0000140 Simmondsia chinensis HOM05D003916 ORTHO05D004655 2.0e-29 132.1 109 64.2
TWI09G0558 Tripterygium wilfordii HOM05D003916 ORTHO05D004655 2.0e-29 132.1 109 64.2
TAR636G0073 Trochodendron aralioides HOM05D003916 ORTHO05D004655 2.0e-29 132.1 107 66.4
AL5G32640 Arabidopsis lyrata HOM05D003916 ORTHO05D004655 2.6e-29 131.7 109 64.2
Carub.0005s1841 Capsella rubella HOM05D003916 ORTHO05D004655 2.6e-29 131.7 109 64.2
ECA248G0794 Erigeron canadensis HOM05D003916 ORTHO05D004655 2.6e-29 131.7 109 64.2
Migut.O00412 Erythranthe guttata HOM05D003916 ORTHO05D004655 2.6e-29 131.7 109 64.2
CARHR161800 Cardamine hirsuta HOM05D003916 ORTHO05D004655 3.3e-29 131.3 109 63.3
Migut.D01881 Erythranthe guttata HOM05D003916 ORTHO05D004655 3.3e-29 131.3 109 64.2
FAN20G2116 Fragaria x ananassa HOM05D003916 ORTHO05D004655 3.3e-29 131.3 110 64.5
Nitab4.5_0010117g0010 Nicotiana tabacum HOM05D003916 ORTHO05D004655 3.3e-29 131.3 109 64.2
Cc03_g12460 Coffea canephora HOM05D003916 ORTHO05D004655 4.4e-29 131.0 129 56.6
Gohir.A08G054500 Gossypium hirsutum HOM05D003916 ORTHO05D004655 4.4e-29 131.0 110 62.7
Gorai.004G066500 Gossypium raimondii HOM05D003916 ORTHO05D004655 4.4e-29 131.0 110 62.7
Lsat_1_v5_gn_1_106300 Lactuca sativa HOM05D003916 ORTHO05D004655 4.4e-29 131.0 104 66.3
Peaxi162Scf00948g00222 Petunia axillaris HOM05D003916 ORTHO05D004655 4.4e-29 131.0 109 64.2
CANSAT35G0488 Cannabis sativa HOM05D003916 ORTHO05D004655 5.7e-29 130.6 109 63.3
Nitab4.5_0005283g0050 Nicotiana tabacum HOM05D003916 ORTHO05D004655 5.7e-29 130.6 112 63.4
RcHm_v2.0_Chr6g0262241 Rosa chinensis HOM05D003916 ORTHO05D004655 5.7e-29 130.6 109 64.2
SGA_v2.0_scaffold114G31877 Striga asiatica HOM05D003916 ORTHO05D004655 5.7e-29 130.6 109 64.2
AT3G52090 Arabidopsis thaliana HOM05D003916 ORTHO05D004655 7.4e-29 130.2 109 63.3
Thhalv10010833m.g Eutrema salsugineum HOM05D003916 ORTHO05D004655 7.4e-29 130.2 109 63.3
Zm00001eb247270 Zea mays HOM05D003916 ORTHO05D004655 7.4e-29 130.2 108 64.8
BcaB01g00447 Brassica carinata HOM05D003916 ORTHO05D004655 9.7e-29 129.8 109 63.3
BcaB02g08590 Brassica carinata HOM05D003916 ORTHO05D004655 9.7e-29 129.8 109 63.3
BcaNung06090 Brassica carinata HOM05D003916 ORTHO05D004655 9.7e-29 129.8 109 63.3
A09p45160 Brassica napus HOM05D003916 ORTHO05D004655 9.7e-29 129.8 109 63.3
C08p27350 Brassica napus HOM05D003916 ORTHO05D004655 9.7e-29 129.8 109 63.3
Sp5g10210 Schrenkiella parvula HOM05D003916 ORTHO05D004655 9.7e-29 129.8 109 63.3
Gohir.D08G064200 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.3e-28 129.4 110 61.8
Nitab4.5_0000130g0090 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.3e-28 129.4 109 64.2
PSO782G0643 Papaver somniferum HOM05D003916 ORTHO05D004655 1.3e-28 129.4 109 63.3
Solyc11g069910.2 Solanum lycopersicum HOM05D003916 ORTHO05D004655 1.3e-28 129.4 109 63.3
Sopen11g028370 Solanum pennellii HOM05D003916 ORTHO05D004655 1.3e-28 129.4 109 63.3
PGSC0003DMG400008095 Solanum tuberosum HOM05D003916 ORTHO05D004655 1.3e-28 129.4 109 63.3
SGA_v2.0_scaffold7G04094 Striga asiatica HOM05D003916 ORTHO05D004655 1.3e-28 129.4 111 62.2
ATR0751G171 Amborella trichopoda HOM05D003916 ORTHO05D004655 1.7e-28 129.0 110 63.6
CAN.G631.46 Capsicum annuum HOM05D003916 ORTHO05D004655 1.7e-28 129.0 109 63.3
HanXRQChr01g0016491 Helianthus annuus HOM05D003916 ORTHO05D004655 1.7e-28 129.0 109 63.3
Os07g0172500 Oryza sativa ssp. japonica HOM05D003916 ORTHO05D004655 1.7e-28 129.0 106 62.3
TAR633G2550 Trochodendron aralioides HOM05D003916 ORTHO05D004655 1.7e-28 129.0 109 63.3
Aqoxy3G00363 Aquilegia oxysepala HOM05D003916 ORTHO05D004655 2.2e-28 128.6 109 62.4
HPP92_009912 Vanilla planifolia HOM05D003916 ORTHO05D004655 2.2e-28 128.6 106 64.2
PSO832G0252 Papaver somniferum HOM05D003916 ORTHO05D004655 3.7e-28 127.9 110 60.0
PSO591G0016 Papaver somniferum HOM05D003916 ORTHO05D004655 4.8e-28 127.5 110 60.0
BcaC02g09283 Brassica carinata HOM05D003916 ORTHO05D004655 6.3e-28 127.1 106 64.2
A04p07280 Brassica napus HOM05D003916 ORTHO05D004655 6.3e-28 127.1 106 64.2
C04p40890 Brassica napus HOM05D003916 ORTHO05D004655 6.3e-28 127.1 106 64.2
BolC4t25674H Brassica oleracea HOM05D003916 ORTHO05D004655 6.3e-28 127.1 106 64.2
BraA04t16424Z Brassica rapa HOM05D003916 ORTHO05D004655 6.3e-28 127.1 106 64.2
BraA09t39977Z Brassica rapa HOM05D003916 ORTHO05D004655 6.3e-28 127.1 106 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1572 Anthoceros agrestis HOM05D003916 ORTHO05D004655 8.2e-28 126.7 109 59.6
CDE10G1147 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 8.2e-28 126.7 107 61.7
PSO063G3578 Papaver somniferum HOM05D003916 ORTHO05D004655 8.2e-28 126.7 109 62.4
arahy.Tifrunner.gnm1.ann1.KPCT5J Arachis hypogaea HOM05D003916 ORTHO05D004655 1.4e-27 125.9 109 60.6
arahy.Tifrunner.gnm1.ann1.U5V8MN Arachis hypogaea HOM05D003916 ORTHO05D004655 1.4e-27 125.9 109 60.6
CDE10G1144 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 1.4e-27 125.9 109 60.6
SMO145G0130 Selaginella moellendorffii HOM05D003916 ORTHO05D004655 2.4e-27 125.2 109 59.6
SEGI_28477 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 3.1e-27 124.8 111 57.7
Aa31LG10G7160 Aethionema arabicum HOM05D003916 ORTHO05D004655 5.3e-27 124.0 117 59.8
Zm00001eb247220 Zea mays HOM05D003916 ORTHO05D004655 9.1e-27 123.2 106 63.2
SEGI_19516 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 3.5e-26 121.3 109 58.7
Mapoly0064s0055 Marchantia polymorpha HOM05D003916 ORTHO05D004655 1.0e-25 119.8 109 55.0
Oeu061209.2 Olea europaea HOM05D003916 ORTHO05D004655 1.7e-25 119.0 143 51.0
Cpa.g.sc125.23 Carica papaya HOM05D003916 ORTHO05D004655 2.9e-25 118.2 132 52.3
MELO3C023562.2 Cucumis melo HOM05D003916 ORTHO05D004655 6.5e-25 117.1 109 56.9
CsaV3_7G030940 Cucumis sativus L. HOM05D003916 ORTHO05D004655 8.5e-25 116.7 109 56.9
Sabra09G0053700 Salix brachista HOM05D003916 ORTHO05D004655 8.5e-25 116.7 102 64.7
Zm00001eb247300 Zea mays HOM05D003916 ORTHO05D004655 8.5e-25 116.7 101 64.4
Pp3c2_2740 Physcomitrium patens HOM05D003916 ORTHO05D004655 1.9e-24 115.5 115 55.7
Zm00001eb247250 Zea mays HOM05D003916 ORTHO05D004655 1.9e-24 115.5 98 64.3
DCAR_003218 Daucus carota HOM05D003916 ORTHO05D004655 2.5e-24 115.2 61 90.2
Sed0017618 Sechium edule HOM05D003916 ORTHO05D004655 4.2e-24 114.4 109 55.0
Migut.E00937 Erythranthe guttata HOM05D003916 ORTHO05D004655 2.1e-23 112.1 62 85.5
Duzib133G0053 Durio zibethinus HOM05D003916 ORTHO05D004655 3.6e-23 111.3 106 59.4
MBI04_g44437_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 1.4e-22 109.4 60 86.7
AagrBONN_evm.TU.Sc2ySwM_368.1582 Anthoceros agrestis HOM05D003916 ORTHO05D004655 2.6e-21 105.1 64 75.0
ClCG09G004040 Citrullus lanatus HOM05D003916 ORTHO05D004655 2.2e-20 102.1 145 42.8
AUR62028413 Chenopodium quinoa HOM05D003916 ORTHO05D004655 1.2e-18 96.3 44 97.7
MBI06_g01064_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 4.5e-18 94.4 67 70.1
AUR62029883 Chenopodium quinoa HOM05D003916 ORTHO05D004655 7.7e-18 93.6 44 95.5
Pp3c14_14340 Physcomitrium patens HOM05D003916 ORTHO05D004655 7.7e-18 93.6 108 49.1
CDE10G0872 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 2.2e-17 92.0 55 78.2
Sc23g0005950 Simmondsia chinensis HOM05D003916 ORTHO05D004655 8.5e-17 90.1 86 57.0
CiPaw.14G001100 Carya illinoinensis HOM05D003916 ORTHO05D004655 1.4e-14 82.8 86 53.5
Nitab4.5_0002959g0030 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.4e-14 82.8 102 52.0
A03p48670 Brassica napus HOM05D003916 ORTHO05D004655 1.8e-14 82.4 51 74.5
BraA03t13970Z Brassica rapa HOM05D003916 ORTHO05D004655 1.8e-14 82.4 51 74.5
Zm00001eb247280 Zea mays HOM05D003916 ORTHO05D004655 4.4e-13 77.8 69 60.9
Medtr6g004540 Medicago truncatula HOM05D003916 ORTHO05D004655 5.7e-13 77.4 75 54.7
AUR62043813 Chenopodium quinoa HOM05D003916 ORTHO05D004655 7.5e-13 77.0 74 56.8
MCO15G160 Micromonas commoda HOM05D003916 ORTHO05D004655 7.5e-13 77.0 101 37.6
SEGI_39087 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 1.7e-12 75.9 75 52.0
BolC8t50352H Brassica oleracea HOM05D003916 ORTHO05D004655 8.3e-12 73.6 74 54.1
PRCOL_00004893 Prasinoderma coloniale HOM05D003916 ORTHO05D004655 5.4e-11 70.9 104 34.6
CiPaw.07G027500 Carya illinoinensis HOM05D003916 ORTHO05D004655 3.8e-09 64.7 75 46.7
Hund27923 Selenicereus undatus HOM05D003916 ORTHO05D380132 3.8e-09 64.7 35 85.7
Haze_26797 Corylus avellana HOM05D003916 ORTHO05D004655 7.2e-08 60.5 110 32.7
Haze_27709 Corylus avellana HOM05D003916 ORTHO05D004655 7.2e-08 60.5 110 32.7
Glyma.06G198550 Glycine max HOM05D003916 ORTHO05D213779 9.4e-08 60.1 32 81.2
CiPaw.15G004900 Carya illinoinensis HOM05D003916 ORTHO05D004655 1.2e-07 59.7 90 41.1
Cre13.g565550 Chlamydomonas reinhardtii HOM05D003916 ORTHO05D004655 1.6e-07 59.3 106 31.1
SEGI_03740 Sequoiadendron giganteum HOM05D018713 ORTHO05D000093 5.2e-06 54.3 39 66.7


User provided reference genes

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