Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sc10g0000140 GWHAASQ00000010 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr11.2605 chr11 - View
Actinidia chinensis Actinidia19401 Lachesis_group0 + View
Arabidopsis lyrata AL5G32640 scaffold_5 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YBFT0T K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) arahy.Tifrunner.gnm1.Arahy.13 - View
Arabidopsis thaliana AT3G52090 DNA-directed RNA polymerase, RBP11-like protein Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II%2C IV and V%3B homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit. NRPB11%3B FUNCTIONS IN: DNA-directed RNA polymerase activity%2C DNA binding%3B INVOLVED IN: transcription%3B LOCATED IN: DNA-directed RNA polymerase V complex%2C DNA-directed RNA polymerase II%2C holoenzyme%2C DNA-directed RNA polymerase II%2C core complex%2C DNA-directed RNA polymerase IV complex%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11%2C 13-16kDa subunit%2C conserved site (InterPro:IPR008193)%2C DNA-directed RNA polymerase%2C dimerisation (InterPro:IPR011261)%2C DNA-directed RNA polymerase%2C RBP11-like (InterPro:IPR009025)%3B BEST Arabidopsis thaliana protein match is: RNApolymerase 14 kDa subunit (TAIR:AT2G29540.2)%3B Has 990 Blast hits to 990 proteins in 256 species: Archae - 62%3B Bacteria - 0%3B Metazoa - 336%3B Fungi - 323%3B Plants - 106%3B Viruses - 0%3B Other Eukaryotes - 163 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaNung06090 Contig2384 - View
Brassica napus C07p46780 C07 - View
Brassica napus A03p48670 A03 - View
Corylus avellana Haze_03179 Similar to NRPB11: DNA-directed RNA polymerases II, IV and V subunit 11 (Arabidopsis thaliana OX%3D3702) 1 - View
Citrus clementina Ciclev10033103m.g scaffold_4 - View
Carpinus fangiana Cfa010792 Cfa04 + View
Cardamine hirsuta CARHR161800 DNA-directed RNA polymerase II subunit J Chr5 - View
Carya illinoinensis CiPaw.13G006500 K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) Chr13 + View
Carya illinoinensis CiPaw.14G001100 PF13656 - RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L_2) Chr14 + View
Citrullus lanatus ClCG09G004040 DNA-directed RNA polymerase II subunit J CG_Chr09 - View
Citrullus lanatus ClCG10G012300 DNA-directed RNA polymerase II subunit J CG_Chr10 - View
Cucumis melo MELO3C023562.2 DNA-directed RNA polymerases II, IV and V subunit 11-like chr01 - View
Cucumis melo MELO3C023983.2 DNA-directed RNA polymerases II, IV and V subunit 11 chr04 - View
Corchorus olitorius COL.COLO4_04866 DNA-directed RNA polymerase%2C RBP11-like protein AWUE01012051.1 + View
Capsella rubella Carub.0005s1841 K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) scaffold_5 - View
Cucumis sativus L. CsaV3_3G032080 DNA-directed RNA polymerase II subunit RPB11 chr3 - View
Cucumis sativus L. CsaV3_7G030940 DNA-directed RNA polymerase II subunit RPB11 chr7 - View
Davidia involucrata Dinv09344 GWHABJS00000020 - View
Durio zibethinus Duzib138G1764 NW_019167893.1 + View
Durio zibethinus Duzib133G0053 NW_019167938.1 + View
Erigeron canadensis ECA248G0794 Conyza_canadensis_scaffold:9 - View
Erigeron canadensis ECA234G4622 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.G03369 Chr07 - View
Eutrema salsugineum Thhalv10010833m.g K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) scaffold_16 + View
Gossypium hirsutum Gohir.D08G064200 K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) D08 + View
Gossypium hirsutum Gohir.A08G054500 K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) A08 + View
Glycine max Glyma.09G228500 K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) Gm09 - View
Glycine max Glyma.12G008000 K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) Gm12 + View
Gossypium raimondii Gorai.004G066500 Chr04 + View
Helianthus annuus HanXRQChr01g0016491 Probable DNA-directed RNA polymerase, RBP11-like HanXRQChr01 - View
Lactuca sativa Lsat_1_v5_gn_1_106300 Lsat_1_v8_lg_1 - View
Manihot esculenta Manes.07G007100 Chromosome07 + View
Manihot esculenta Manes.10G140600 Chromosome10 - View
Punica granatum PGR031G2324 NC_045127.1 - View
Phaseolus vulgaris Phvul.011G010100 K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) Chr11 + View
Sechium edule Sed0017618 LG07 - View
Sechium edule Sed0020332 LG05 - View
Schrenkiella parvula Sp5g10210 K03008 - DNA-directed RNA polymerase II subunit RPB11 (RPB11, POLR2J) ch5-1 + View
Theobroma cacao Thecc.01G409200 Chromosome_1 - View
Tripterygium wilfordii TWI09G0558 NC_052245.1 + View
Vaccinium macrocarpon vmacro13676 Similar to NRPB11: DNA-directed RNA polymerases II, IV and V subunit 11 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1127G0323 CM024076.1 + View