Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 2.4e-309 1064.7 551 100.0
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 5.9e-223 777.7 552 71.2
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.6e-220 769.6 558 69.0
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 8.0e-220 767.3 559 69.9
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 9.7e-218 760.4 570 68.2
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 2.0e-207 726.1 558 66.5
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 5.0e-206 721.5 553 66.7
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 6.5e-206 721.1 554 66.8
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 8.5e-206 720.7 542 65.3
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 1.5e-205 719.9 560 64.8
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 1.9e-205 719.5 562 65.8
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 4.2e-205 718.4 554 65.7
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 7.2e-205 717.6 558 65.1
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 6.8e-203 711.1 552 65.2
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 8.8e-203 710.7 557 64.3
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 2.0e-202 709.5 554 64.4
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 3.4e-202 708.8 560 64.5
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 4.4e-202 708.4 551 64.2
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 4.4e-202 708.4 558 64.3
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 5.7e-202 708.0 562 64.4
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 5.7e-202 708.0 587 62.9
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 7.5e-202 707.6 565 63.9
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 9.8e-202 707.2 554 64.3
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 9.8e-202 707.2 553 65.6
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.3e-201 706.8 561 64.0
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 2.2e-201 706.1 557 65.0
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 2.2e-201 706.1 557 63.2
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 2.2e-201 706.1 558 64.9
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 2.2e-201 706.1 551 64.4
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.7e-201 705.3 558 65.8
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 4.9e-201 704.9 561 63.6
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 4.9e-201 704.9 559 64.6
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 1.1e-200 703.7 573 62.0
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 1.4e-200 703.4 558 64.2
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 2.4e-200 702.6 562 64.2
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 4.1e-200 701.8 569 64.0
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 3.5e-199 698.7 554 64.8
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 5.9e-199 698.0 556 67.8
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 2.3e-198 696.0 553 63.3
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 2.3e-198 696.0 551 64.1
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 2.3e-198 696.0 537 64.4
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.1e-197 693.7 563 62.3
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 1.9e-197 693.0 560 64.6
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 3.3e-197 692.2 558 63.4
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 4.3e-197 691.8 565 62.3
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 7.3e-197 691.0 559 64.2
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.2e-196 690.3 571 62.9
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.6e-196 689.9 560 63.4
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 2.1e-196 689.5 537 63.9
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 2.1e-196 689.5 552 63.2
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 2.8e-196 689.1 575 61.9
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 4.7e-196 688.3 555 62.9
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 4.7e-196 688.3 555 62.9
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 8.0e-196 687.6 560 62.7
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 1.0e-195 687.2 554 63.4
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 2.3e-195 686.0 550 62.9
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 3.0e-195 685.6 563 62.2
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 3.0e-195 685.6 516 67.6
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 5.2e-195 684.9 559 62.8
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 2.0e-194 682.9 564 62.2
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 2.2e-193 679.5 554 63.7
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 3.7e-193 678.7 558 62.7
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.1e-192 677.2 657 56.6
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.4e-192 676.8 560 62.0
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 3.2e-192 675.6 584 60.1
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 3.2e-192 675.6 538 63.8
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 9.2e-192 674.1 556 62.2
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 1.0e-190 670.6 584 60.1
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 1.3e-190 670.2 554 62.8
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 6.6e-190 667.9 541 63.4
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 1.9e-189 666.4 604 58.8
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 2.5e-189 666.0 556 62.2
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 8.0e-188 661.0 556 60.1
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.2e-186 657.1 556 59.7
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.7e-185 653.3 558 61.5
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 2.9e-185 652.5 545 60.6
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 1.3e-182 643.7 597 57.8
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 3.9e-182 642.1 548 60.2
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 3.9e-182 642.1 541 59.9
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 1.1e-181 640.6 560 60.0
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 3.6e-180 635.6 551 60.1
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 4.4e-178 628.6 564 58.0
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 3.9e-174 615.5 561 57.4
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 5.6e-173 611.7 526 60.3
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 2.8e-172 609.4 594 56.4
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.4e-171 607.1 471 65.6
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 3.4e-170 602.4 377 76.9
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.4e-168 596.3 498 62.4
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.2e-167 594.0 500 61.0
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 3.0e-166 589.3 494 61.1
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 1.9e-165 586.6 554 57.6
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 4.3e-165 585.5 566 57.8
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 1.7e-161 573.5 522 58.6
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 8.4e-161 571.2 336 80.4
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.1e-160 570.9 551 55.2
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 9.0e-155 551.2 481 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 3.2e-152 542.7 532 52.4
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.1e-150 535.4 555 53.5
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.1e-147 527.7 570 52.5
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 7.9e-143 511.5 550 49.1
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 3.0e-142 509.6 440 60.0
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 4.2e-136 489.2 275 82.9
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 9.3e-136 488.0 276 81.9
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 6.5e-129 465.3 477 52.0
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 3.6e-119 433.0 343 61.8
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 1.5e-114 417.5 326 59.5
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 2.0e-114 417.2 548 50.0
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 7.2e-112 408.7 394 57.4
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.5e-109 401.0 217 85.7
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 2.1e-103 380.6 533 44.3
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 2.2e-97 360.5 382 53.7
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.0e-94 350.1 405 51.4
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.0e-89 332.8 270 62.2
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 5.0e-89 332.8 424 47.2
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 9.5e-88 328.6 186 80.6
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 3.6e-87 326.6 186 81.7
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 8.9e-86 322.0 566 35.0
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.9e-80 304.3 503 36.4
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 2.5e-80 303.9 506 37.5
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 5.4e-75 286.2 288 55.6
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.0e-73 282.0 307 51.1
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.3e-73 281.6 208 64.4
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 3.7e-68 263.5 312 42.6
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 6.2e-63 246.1 140 80.7
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 9.9e-61 238.8 312 40.7
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 7.1e-59 232.6 284 47.5
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 1.2e-55 221.9 288 46.9
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 1.6e-55 221.5 119 84.0
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 2.2e-52 211.1 285 46.0
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.1e-43 182.2 356 32.6
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.5e-42 177.2 251 43.8
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.6e-39 168.3 389 26.0
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 3.1e-38 164.1 93 80.6
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 4.5e-37 160.2 582 25.3
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 1.8e-33 148.3 122 59.0
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 1.4e-30 138.7 82 76.8
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 2.1e-23 114.8 99 58.6
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 1.1e-19 102.4 62 74.2
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 8.7e-17 92.8 219 29.7
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 8.2e-15 86.3 55 70.9
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 5.0e-12 77.0 60 56.7
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 2.8e-07 61.2 45 62.2


User provided reference genes

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