Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 1.8e-216 755.7 416 100.0
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 1.7e-65 254.2 317 46.7
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 2.2e-65 253.8 313 47.9
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 1.9e-64 250.8 317 47.3
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 3.2e-64 250.0 432 44.7
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 1.2e-63 248.1 367 43.3
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.1e-63 247.3 320 45.9
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 2.7e-63 246.9 326 46.3
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 7.9e-63 245.4 356 43.3
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 1.5e-61 241.1 350 43.1
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.0e-61 240.7 318 45.3
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 3.3e-61 240.0 317 46.1
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 1.8e-59 234.2 452 42.3
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 2.4e-59 233.8 330 43.9
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 4.1e-59 233.0 438 38.1
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 1.2e-58 231.5 318 47.8
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 1.6e-58 231.1 435 43.9
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 4.5e-58 229.6 438 38.4
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 7.7e-58 228.8 340 42.6
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 1.7e-57 227.6 317 44.2
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 6.5e-57 225.7 431 39.9
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 1.1e-56 224.9 335 43.9
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 5.5e-56 222.6 330 41.5
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 2.1e-55 220.7 344 44.5
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 3.6e-55 219.9 378 40.5
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 3.6e-55 219.9 339 43.7
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 4.7e-55 219.5 327 45.0
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 6.1e-55 219.2 328 43.0
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.0e-54 218.4 384 37.2
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 1.4e-54 218.0 354 41.5
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.8e-54 217.6 172 62.2
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 1.8e-54 217.6 172 62.2
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 6.7e-54 215.7 240 50.4
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 1.5e-53 214.5 316 43.7
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.5e-53 214.5 314 43.0
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 7.5e-53 212.2 369 44.7
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 7.5e-53 212.2 331 42.3
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 9.7e-53 211.8 365 45.5
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 1.7e-52 211.1 364 44.0
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 2.8e-52 210.3 374 45.2
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 3.7e-52 209.9 302 43.7
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 3.7e-52 209.9 371 45.0
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 6.3e-52 209.1 311 43.1
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 8.2e-52 208.8 375 42.1
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.8e-51 207.6 318 42.8
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 2.4e-51 207.2 399 35.6
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 3.1e-51 206.8 417 34.5
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 9.1e-51 205.3 307 41.0
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 9.1e-51 205.3 401 37.2
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 1.2e-50 204.9 289 46.7
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 1.2e-50 204.9 318 40.9
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.2e-50 204.9 180 56.7
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.0e-50 204.1 377 39.3
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 4.5e-50 203.0 350 39.7
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 7.7e-50 202.2 417 33.6
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 1.3e-49 201.4 303 41.9
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 2.9e-49 200.3 409 37.4
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 6.5e-49 199.1 412 35.2
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 8.5e-49 198.7 330 40.3
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 1.5e-48 198.0 352 39.2
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 5.5e-48 196.1 327 41.3
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 5.5e-48 196.1 330 38.8
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 9.4e-48 195.3 251 43.4
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 2.1e-47 194.1 394 37.1
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 2.7e-47 193.7 324 39.8
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 3.6e-47 193.4 328 40.5
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 3.6e-47 193.4 408 35.3
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 1.5e-45 188.0 314 40.8
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 4.4e-45 186.4 363 35.5
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 4.4e-45 186.4 385 36.1
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 9.8e-45 185.3 372 37.9
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.7e-44 184.5 320 38.4
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 2.8e-44 183.7 172 53.5
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 2.8e-44 183.7 392 34.4
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 4.8e-44 183.0 162 56.2
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 6.3e-44 182.6 193 49.2
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 8.3e-44 182.2 322 37.0
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 7.0e-43 179.1 168 53.0
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 5.9e-42 176.0 220 45.9
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 1.7e-41 174.5 163 53.4
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.7e-41 174.5 428 32.5
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 2.9e-41 173.7 162 53.7
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 3.8e-41 173.3 161 53.4
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 5.0e-41 172.9 179 46.4
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 6.5e-41 172.6 186 47.3
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 1.5e-40 171.4 160 53.1
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.5e-40 171.4 228 42.5
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 1.9e-40 171.0 254 41.7
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 1.2e-39 168.3 313 35.1
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 1.2e-39 168.3 313 35.1
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 1.2e-39 168.3 441 31.7
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 3.6e-39 166.8 308 38.6
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 3.6e-39 166.8 308 38.6
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.6e-39 166.8 503 31.6
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 7.8e-34 149.1 259 40.9
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 1.3e-33 148.3 155 52.9
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 2.3e-33 147.5 232 39.7
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 3.8e-33 146.7 287 37.3
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 8.6e-33 145.6 153 50.3
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 4.3e-32 143.3 307 33.6
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 9.5e-32 142.1 253 37.2
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 1.0e-30 138.7 174 41.4
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 1.2e-29 135.2 175 42.3
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 1.7e-28 131.3 153 43.1
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 2.9e-28 130.6 167 42.5
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 3.2e-27 127.1 183 37.7
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 5.9e-26 122.9 176 40.9
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.9e-24 117.9 191 38.7
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 6.8e-22 109.4 202 33.7
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 5.4e-19 99.8 70 67.1
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 2.1e-15 87.8 72 59.7
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.5e-13 81.6 53 69.8
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.7e-10 70.9 56 57.1
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.7e-10 70.9 56 57.1


User provided reference genes

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