Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 1.3e-254 882.5 425 100.0
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.7e-238 828.9 408 97.3
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 5.0e-238 827.4 408 96.8
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 8.5e-238 826.6 408 96.6
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.5e-237 825.9 408 97.1
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 1.9e-237 825.5 408 96.8
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 3.2e-237 824.7 408 96.8
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 3.2e-237 824.7 408 96.3
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 4.2e-237 824.3 406 97.3
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 7.2e-237 823.5 408 96.6
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 9.4e-237 823.2 408 97.1
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.2e-236 822.8 408 96.1
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 1.6e-236 822.4 406 96.8
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.6e-236 822.4 408 96.1
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.6e-236 822.4 406 96.8
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.6e-236 822.4 408 96.3
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 2.7e-236 821.6 408 96.3
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.7e-236 821.6 408 96.8
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 4.7e-236 820.8 406 96.8
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 4.7e-236 820.8 406 96.6
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.1e-236 820.5 406 96.3
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 6.1e-236 820.5 408 96.1
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 6.1e-236 820.5 408 96.3
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 8.0e-236 820.1 408 95.3
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 8.0e-236 820.1 406 96.8
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 8.0e-236 820.1 406 96.6
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 8.0e-236 820.1 408 95.6
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 1.0e-235 819.7 406 96.8
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 1.4e-235 819.3 408 96.3
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.4e-235 819.3 408 95.6
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.8e-235 818.9 408 96.3
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.8e-235 818.9 410 95.6
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 2.3e-235 818.5 408 96.1
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.3e-235 818.5 406 96.1
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.3e-235 818.5 406 96.1
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 2.3e-235 818.5 408 95.8
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 2.3e-235 818.5 408 95.6
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 3.0e-235 818.1 406 96.6
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.0e-235 818.1 406 96.6
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 3.0e-235 818.1 408 95.3
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 3.0e-235 818.1 408 96.1
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 4.0e-235 817.8 408 95.3
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 4.0e-235 817.8 408 96.1
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 5.2e-235 817.4 408 95.8
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 5.2e-235 817.4 406 95.6
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 5.2e-235 817.4 406 95.6
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 6.8e-235 817.0 406 95.3
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 6.8e-235 817.0 406 95.3
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 6.8e-235 817.0 406 95.3
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 6.8e-235 817.0 406 95.3
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 6.8e-235 817.0 406 95.8
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.8e-235 817.0 408 95.6
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 6.8e-235 817.0 408 95.6
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 6.8e-235 817.0 406 95.8
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 6.8e-235 817.0 406 95.3
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 6.8e-235 817.0 408 95.8
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 8.8e-235 816.6 406 95.6
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 8.8e-235 816.6 408 95.6
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.2e-234 816.2 406 95.6
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 1.2e-234 816.2 407 96.3
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.5e-234 815.8 406 95.1
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.5e-234 815.8 406 95.1
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 1.5e-234 815.8 406 95.8
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.5e-234 815.8 408 95.3
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 2.0e-234 815.5 408 95.1
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 2.0e-234 815.5 406 96.1
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 2.0e-234 815.5 408 95.3
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 3.4e-234 814.7 408 95.8
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 3.4e-234 814.7 406 95.8
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 5.7e-234 813.9 407 95.8
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 7.5e-234 813.5 406 95.8
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 7.5e-234 813.5 406 95.3
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 7.5e-234 813.5 406 95.1
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.3e-233 812.8 406 95.3
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.7e-233 812.4 406 94.6
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 2.2e-233 812.0 406 94.6
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 2.2e-233 812.0 406 94.6
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 2.2e-233 812.0 408 95.1
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 2.2e-233 812.0 408 95.1
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.8e-233 810.8 440 90.0
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.8e-233 810.8 408 95.1
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 6.3e-233 810.4 406 95.1
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 6.3e-233 810.4 406 95.3
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 6.3e-233 810.4 406 95.8
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 8.3e-233 810.1 408 94.9
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.4e-232 809.3 406 95.1
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 1.8e-232 808.9 406 94.8
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.0e-230 803.1 407 94.8
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.5e-229 798.5 406 93.3
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 8.0e-228 793.5 442 88.0
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 4.0e-227 791.2 408 93.1
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 1.2e-226 789.6 405 90.4
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 2.6e-226 788.5 408 92.6
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 9.8e-226 786.6 406 90.6
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.0e-224 780.4 405 92.8
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.2e-223 779.6 406 89.7
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.6e-223 779.2 408 92.4
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.8e-222 774.6 406 88.7
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.8e-222 774.6 406 88.7
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 2.6e-218 761.9 417 89.0
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.5e-218 760.4 408 90.4
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 5.8e-202 707.6 408 81.9
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.7e-198 696.0 342 97.1
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 3.0e-190 668.7 331 96.1
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.9e-189 666.0 406 81.8
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 4.7e-188 661.4 410 77.3
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.2e-178 630.2 390 81.3
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.1e-171 607.1 404 73.8
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.2e-170 603.6 312 91.0
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 3.1e-163 578.9 408 73.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.6e-162 574.3 408 73.0
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.1e-155 552.4 269 97.8
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.6e-151 538.9 355 72.7
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.3e-149 531.9 340 79.1
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.0e-146 523.1 262 94.7
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 2.7e-143 512.7 269 92.6
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 3.9e-134 482.3 233 97.4
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.5e-128 463.8 293 78.8
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 7.7e-122 441.4 327 71.3
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-120 437.2 373 60.1
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 4.7e-119 432.2 355 64.8
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 6.1e-119 431.8 357 64.1
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 8.0e-119 431.4 267 77.5
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 1.7e-113 413.7 350 62.9
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.2e-108 396.7 196 94.4
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.7e-98 363.2 267 69.3
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.8e-94 348.6 214 78.5
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 7.5e-93 345.1 281 65.1
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.3e-92 344.4 167 97.6
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.7e-92 344.0 183 87.4
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 8.9e-86 321.6 160 94.4
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.2e-85 321.2 160 93.8
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.6e-85 320.1 154 96.1
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 9.2e-83 311.6 158 94.3
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.4e-75 287.0 140 95.7
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 7.3e-72 275.4 146 91.8
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 2.8e-71 273.5 140 92.9
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.2e-71 272.3 261 58.2
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 3.1e-70 270.0 185 74.1
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 3.2e-67 260.0 167 79.6
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.9e-52 209.5 101 96.0
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.0e-37 161.0 80 95.0
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.8e-25 121.3 62 93.5
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.4e-22 111.7 104 58.7
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 3.2e-19 100.5 58 84.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-16 92.0 52 80.8
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-16 92.0 47 91.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.7e-15 88.2 52 82.7
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.1e-14 85.5 88 59.1
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 1.8e-14 84.7 44 86.4
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-14 84.3 59 69.5


User provided reference genes

Program Settings